Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq19602 165 7e-35
seq3401 138 9e-27
seq5476 120 2e-21
seq4396 114 1e-19
seq210 113 4e-19
seq533 109 4e-18
seq11485 104 2e-16
seq4589 104 2e-16
seq30157 102 7e-16
seq257 102 7e-16
seq24793 96.9 3e-14
seq12662 96.9 3e-14
seq8506 96.9 3e-14
seq27532 91.5 1e-12
seq964 89.7 4e-12
seq5834 87.8 1e-11
seq38054 86.0 5e-11
seq9117 86.0 5e-11
>seq19602
Length=3420
Score = 165 bits (182), Expect = 7e-35
Identities = 549/842 (65%), Gaps = 18/842 (2%)
Strand=Plus/Minus
Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816
||||| ||| ||||| || |||||| ||||| ||||||||||||| ||||||
Sbjct 1378 GAAGAAGGTATCTTTGAGGTGAAAGCTACCGCCGGAGACACTCATCTTGGTGGTGAAGAT 1319
Query 551817 TTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACGAAAAAACAA--AGT 551872
||||| || ||| |||| | ||| | |||| |||| ||||| | || | ||| ||
Sbjct 1318 TTTGACAACAGAATGGTCAACCAT--TTTGTTCAAGAGTTTAAGAGGAAGAGCAAGAAGG 1261
Query 551873 TGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAA 551932
|| || | | | | | ||||||| | | | || || || ||||| ||||||||
Sbjct 1260 ACAT-TAGCGGTAACC-CTAGAGCTCTTAGGAGGTTGAGGACGGCCTGCGAGAGAGCCAA 1203
Query 551933 ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAAT 551992
| ||||||| || | |||||||| || || | || || | |||||||| ||
Sbjct 1202 GAGGACTCTTTCTTCCACCGCGCAAACCACCATCGAGATTGACTCTCTCTTTGAGGGGAT 1143
Query 551993 TGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAG 552052
||||| || | | | | | || | ||||| || | |||||| || ||
Sbjct 1142 TGATTTCTATTCTGCACTCACACGTGCTAGGTTTGAGGAACTCAACATTGATCTTTTCAG 1083
Query 552053 AAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAGATTCAAAGATTGATAAATCCAAAG 552111
|| || || || || || |||| | || | ||| | ||||| || || || |
Sbjct 1082 GAAGTGTATGGAGCCTGTTGAG-AAGTGTCTACGTGATGCTAAGATGGACAAGAGCACGG 1024
Query 552112 TACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT-- 552169
| ||||| |||| ||||| ||||| |||||| | || || ||| ||| | | |
Sbjct 1023 TCCATGATGTTGTACTTGTCGGTGGTTCTACACGTATCCCCAAAGTTCAACAGCTTCTCC 964
Query 552170 AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTT 552227
||| | | |||||||||||| | | || |||| |||| || || |||||||||
Sbjct 963 AAGATTTC--TTCAATGGTAAAGAGCTC--TGCAAGTCCATTAACCCTGACGAGGCTGTT 908
Query 552228 GCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAA 552287
|| |||||||| || |||| | |||||||| || || |||| || | |||
Sbjct 907 GCTTATGGTGCAGCGGTTCAGGGTGCTATTCTAAGCGGTGAAGGGAATGAGAAGGTGCAA 848
Query 552288 AATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATT 552347
| || |||| | || || ||||| || ||||||||| | ||||||| || || |
Sbjct 847 GACCTTCTACTCTTGGACGTGACTCCCCTTTCTCTTGGTCTTGAAACAGCCGGTGGAGTC 788
Query 552348 ATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCT 552407
||||| | | ||| | ||||| || || ||||| || || | || || |||
Sbjct 787 ATGACCACCTTGATCCAGAGAAACACAACCATTCCAACCAAGAAGGAACAGGTCTTCTCT 728
Query 552408 ACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTC 552467
|| || ||||| || || ||| ||| |||||| | | ||||| || | |
Sbjct 727 ACTTACTCAGACAACCAGCCTGGTGTGTTGATTCAAGTCTACGAAGGTGAGATAGCCAGA 668
Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527
|| ||||| || || | || || | || | | ||||| ||||| ||||| |||
Sbjct 667 ACCAAAGACAACAACCTCCTCGGAAAGTTCGAGCTCTCTGGTATCCCTCCGGCTCCCCGT 608
Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587
|| || || || || ||| |||||| || ||||| || || || | |||||| ||
Sbjct 607 GGTGTCCCTCAGATCACAGTGTGTTTCGACATTGATGCAAACGGTATACTCAATGTGTCT 548
Query 552588 GC 552589
||
Sbjct 547 GC 546
>seq3401
Length=15652
Score = 138 bits (152), Expect = 9e-27
Identities = 443/682 (65%), Gaps = 8/682 (1%)
Strand=Plus/Minus
Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966
|| ||||| || ||||| ||||| || | | ||||| || | |||| || |||||
Sbjct 10159 CTGAGAACGGCCTGCGAGAGAGCGAAGAGGACGCTTTCTTCCACTGCTCAGACGACTATC 10100
Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026
|| | ||||| || ||||| |||| | | || | || ||| | || | |||
Sbjct 10099 GAGATCGATTCTTTGCACGAGGGTGTTGACTTCTACGCGACGATATCGCGTGCGAGGTTT 10040
Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086
|| || || ||||| || || || || || || || || ||||||| |||
Sbjct 10039 GAGGAGATGAACATGGATCTGTTCAGGAAGTGTATGGACCCCGTGGAGAAAGTTTTGAGA 9980
Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146
||| | ||| ||||||| | |||||||| | || |||||||| ||||| || ||
Sbjct 9979 GATGCTAAGCTTGATAAGAGCCGTGTACATGAGGTGGTTCTTGTTGGAGGATCGACGAGG 9920
Query 552147 ATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204
|| ||||| |||| | | || ||| ||| || ||| || || | | || ||
Sbjct 9919 ATACCTAAGATTCAGCAGCTTTTGCAAGA-CTTCTT-CAACGGGAAGGAGCTC--TGCAA 9864
Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262
| | |||| || || || ||||| ||||| || || || |||| || || ||||| |
Sbjct 9863 GAGCATTAACCCTGACGAAGCTGTCGCCTACGGAGCTGCGGTTCAGGCGGCGATTCTGAC 9804
Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322
||| || || || | ||| ||||| | ||| | || || | || || ||
Sbjct 9803 TGGCGAAGGAAGCGACAAGGTGCAAGATATTCTGCTTCTCGACGTGGCGCCGCTGAGCCT 9744
Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382
||| | || || | ||| ||| | ||| || | ||| || || || || ||||
Sbjct 9743 TGGGATCGAGACGGCTGGTGGTGTGATGTCTGTGTTGATCCCGAGGAACACGACGGTTCC 9684
Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442
|||||| || | || || || || ||| | || || || | | ||| || ||
Sbjct 9683 TTGTAAGAAGGAGCAAGTGTTCTCCACCTATGCGGACAACCAGCCGGGGGTTCTGATCCA 9624
Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502
| | | |||||||| || || ||||| || || | || || || ||| | |
Sbjct 9623 AGTCTACGAAGGAGAGCGAGCGAGGACGAAAGACAACAACCTTCTCGGAACGTTTGAGCT 9564
Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562
|||||||||||||||| || |||||||| || || ||| | ||| ||||| || ||
Sbjct 9563 TAAAGGTATTCCTCCTGCGCCGCGTGGAGTCCCTCAGATTAATGTTTGCTTCGACATGGA 9504
Query 552563 TGCCAATGGAATTTTGAATGTG 552584
|||||||| || ||||| |||
Sbjct 9503 CGCCAATGGGATCTTGAACGTG 9482
>seq5476
Length=11800
Score = 120 bits (132), Expect = 2e-21
Identities = 337/516 (65%), Gaps = 1/516 (0%)
Strand=Plus/Plus
Query 552076 AAGT-TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
|||| ||| ||||| | ||||| ||||| || || ||||| ||||||| ||||||
Sbjct 10305 AAGTGTTTGAGAGACGCGAAGATGGATAAGAGTAATGTTCATGACGTTGTGCTCGTTGGT 10364
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAA 552194
|| || || || || ||||| ||| | | || || ||| ||||| || |
Sbjct 10365 GGGTCCACTAGGATCCCTAAGGTTCAGCAGCTTTTGCAGGATTTTTTTAATGGGAAGGAG 10424
Query 552195 TTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCT 552254
| | | ||| |||| || || ||||||||||| ||||| || || |||| || ||
Sbjct 10425 CTTTGTAAGAGTATTAACCCCGACGAGGCTGTTGCGTATGGCGCGGCGGTTCAGGCGGCG 10484
Query 552255 ATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCT 552314
||| | || || |||| || | ||| || | | ||| | |||||||| |||
Sbjct 10485 ATTTTGAGCGGGGAAGGGAATGAGAAGGTTCAAGATTTGTTGCTTCTTGATGTTACGCCT 10544
Query 552315 CTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACT 552374
| ||| | || || || || | ||| ||| | |||||| | | || || || ||
Sbjct 10545 TTGTCTTTGGGGTTGGAGACTGCTGGTGGTGTGATGACTGTTTTGATTCCGAGGAACACA 10604
Query 552375 ACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTT 552434
|| ||||| |||||| | | || || || ||||| || || || | | ||||
Sbjct 10605 ACGATTCCGACTAAAAAGGAGCAGATCTTCTCGACTTATTCGGACAACCAGCCCGGTGTT 10664
Query 552435 ACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACT 552494
|| ||| | | ||||||||| ||| || |||||||| || | | || |
Sbjct 10665 TTGATCCAAGTCTATGAAGGAGAGAGAGCGAGGACGAAAGATAACAACCTTTTGGGGAAG 10724
Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554
||| | | ||||| |||||||| || || || || ||||| || || |||
Sbjct 10725 TTTGAGCTGAGTGGTATCCCTCCTGCGCCACGAGGTGTTCCGCAGATCACTGTGTGTTTT 10784
Query 552555 GATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590
|||||||| || ||||| || ||||| ||| | |||
Sbjct 10785 GATATCGACGCTAATGGTATCTTGAACGTGTCGGCT 10820
>seq4396
Length=13502
Score = 114 bits (126), Expect = 1e-19
Identities = 163/225 (72%), Gaps = 12/225 (5%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
||| | ||| |||||||||||||| ||| | ||||| || ||||| ||||| |||||
Sbjct 12049 GAGCCTGAGGACAAGATGAAGGGTCGACTCTTTTTGG--ATGTTGTAGTCAGCGAGAGTA 11992
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| |||||||||||| || ||||| || ||||| || |||||||| || ||||| |||
Sbjct 11991 CGCCCATCTTCAAGTTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCT 11932
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTC 563429
|| || || ||||| || ||| || || || || || |||| | || ||
Sbjct 11931 TCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGT----GTCTGAGCTTTCCACCTC 11876
Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| || | || || || || ||||| |||||||| || |||||
Sbjct 11875 GAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAATATCTGCAT 11831
>seq210
Length=42965
Score = 113 bits (124), Expect = 4e-19
Identities = 340/525 (65%), Gaps = 0/525 (0%)
Strand=Plus/Plus
Query 552060 ATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAA 552119
|| || || || || | ||| | ||||| |||||||||| || | || || ||
Sbjct 16084 ATGGACCCCGTGGAGAAGGTTCTTAGAGACGCAAAGATTGACAAGAACCGTGTCCACGAG 16143
Query 552120 ATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTAT 552179
| || |||||||| ||||| || || ||||| || |||| | | || ||
Sbjct 16144 GTGGTTCTTGTTGGAGGATCCACGAGGATTCCGAAGATTCAGCAGCTTTTGCAGGATTTC 16203
Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239
||||| || || | | | | || |||| || ||||| |||||||| ||||| |||
Sbjct 16204 TTCAACGGGAAGGAGCTTTGTAAGAGCATTAACCCTGATGAAGCTGTTGCGTATGGAGCC 16263
Query 552240 GCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTT 552299
|| | || ||||| ||||| |||| || ||| || | || || | | |||
Sbjct 16264 GCGGTGCAGGCAGCGATTCTGACTGGTGAAGGGAGTGATAAGGTGCAGGATCTGCTGCTT 16323
Query 552300 GTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTT 552359
| || || | || | |||||| ||||| || | ||| || | |||||| |
Sbjct 16324 CTTGACGTGGCGCCGTTGAGTCTTGGATTAGAGACGGCTGGTGGGGTGATGACTGTGTTG 16383
Query 552360 ATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGAT 552419
||| || || || || |||||||||| || | || || || |||||||| ||
Sbjct 16384 ATCCCGAGGAACACGACGGTTCCTTGTAAGAAGGAGCAGGTGTTCTCCACGTATTCGGAC 16443
Query 552420 AATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAAT 552479
||||| | | |||| |||||| ||| |||||||| | || | ||||||
Sbjct 16444 AATCAGCCGGGTGTTTTGATTCAAGTTTACGAAGGAGAGCGTGCGAGGACGAGAGATAAC 16503
Query 552480 AATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAA 552539
|| | || || || ||| | | | || || ||||||||||| ||||| || || ||
Sbjct 16504 AACCTTCTCGGAACGTTTGAGCTCAAGGGGATCCCTCCTGCTCCGCGTGGGGTTCCTCAG 16563
Query 552540 ATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584
|| | || ||| ||||| || || || || || ||||| |||
Sbjct 16564 ATCAATGTCTGTTTTGATATTGACGCTAACGGGATCTTGAACGTG 16608
>seq533
Length=33188
Score = 109 bits (120), Expect = 4e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448
|||| || | || || || ||||| || || || ||||| ||||| || | |||||
Sbjct 26731 AAGTAACCAAGGCTGTTATTACTGTGCCTGCTTACTTTAACGACTCGCAGAGGACAGCTA 26790
Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508
||||||||||||| || |||||||| | ||||||| |||||||||||||| || ||||
Sbjct 26791 CTAAAGATGCTGGTCGCATTGCTGGTTTGGATGTTCTACGTATTATCAATGAGCCCACTG 26850
Query 550509 CTGCTGCACTTGCATATGGACTTGA 550533
||||| | | || ||||| ||||
Sbjct 26851 CTGCTTCTTTGGCTTATGGTTTTGA 26875
>seq11485
Length=6519
Score = 104 bits (114), Expect = 2e-16
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
||||||||| || |||||||| ||| || || |||||||||||| || || || |
Sbjct 4924 GAGACGGAGGACGAGATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCG 4865
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
| ||| ||||| ||||| || || || || ||||| ||||| || ||||||||||||||
Sbjct 4864 TCCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTC 4805
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435
|| || || || ||| ||| || ||||| || || | | | || | |||
Sbjct 4804 CTTGTCCTGGATCTTTGCTTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGT 4745
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
| || || || || | ||| || || ||||| ||||||
Sbjct 4744 GATGGTCTTGCCTGTCAAAGTCTTGACAAAAATCTGCATA 4705
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || || | ||||| ||| || || || ||||||||||| | ||| |
Sbjct 5151 AGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGA 5092
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||| || || ||||| || || || || ||||| ||||| || ||||| || |||||
Sbjct 5091 CCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCC 5032
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGT 563435
|| || ||||| || ||| || || || || |||| | | || ||| || ||
Sbjct 5031 TTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCAC-TTCAAGGGT 4973
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| |||||||| || || || || |||||||| ||||||
Sbjct 4972 AATGGTTTTACCGGTGAGTGTCTTGACGAAAATCTGCATA 4933
>seq4589
Length=13169
Score = 104 bits (114), Expect = 2e-16
Identities = 125/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054
||||| |||||| | || ||||| ||| ||||||||| |||| | |||||| | |||
Sbjct 9812 ATAGGGATAGATCTTGGTACCACCTATTCTTGTGTTGGCGTTTACAAGAATGGTCATGTT 9871
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
||||| ||||||||||| ||||| ||| | | |||||| || | ||| ||||||| ||
Sbjct 9872 GAAATCATTGCCAATGACCAAGGCAACCGTATTACTCCTTCCTGGGTTGCTTTCACCGAC 9931
Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCC 550164
| ||| | ||||||| || || || | || || ||| ||||||
Sbjct 9932 TCCGAAAGACTCATTGGTGAGGCTGCTAAGAACCAGGCTGCTGTTAATCC 9981
>seq30157
Length=1524
Score = 102 bits (112), Expect = 7e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054
||||| |||||| | || ||||| || |||||||||||||| | || ||| | |||
Sbjct 576 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAACGGTCATGTT 517
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
||||| ||||||||||| ||||||||| | | |||||| |||| ||| ||||||| ||
Sbjct 516 GAAATCATTGCCAATGACCAAGGTAACCGTATTACTCCTTCTTGGGTTGCTTTCACCGA 458
>seq257
Length=40415
Score = 102 bits (112), Expect = 7e-16
Identities = 112/148 (76%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 550387 AGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445
||||| |||| | || || | ||||| || || || ||||||||||| || | |
Sbjct 37860 AGAAGGTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGACTCGCAGAGGACGG 37919
Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505
|||||||||||||||| ||||||||||| | | |||||||||||||| ||||| || |
Sbjct 37920 CTACTAAAGATGCTGGTCGTATTGCTGGGTTGGAGGTTCTTCGTATTATTAATGAGCCCA 37979
Query 550506 CTGCTGCTGCACTTGCATATGGACTTGA 550533
| |||||| | | || ||||| ||||
Sbjct 37980 CGGCTGCTTCGTTGGCTTATGGGTTTGA 38007
>seq24793
Length=2311
Score = 96.9 bits (106), Expect = 3e-14
Identities = 159/225 (71%), Gaps = 12/225 (5%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
||| | ||| |||||||||||||| ||| | ||| || ||||||||||| |||||
Sbjct 1623 GAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGG--ATGTTGTAATCAGCGAGAGTC 1680
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
|| || || || || |||||||| || ||||| || |||||||| || ||||| ||
Sbjct 1681 CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCC 1740
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTC 563429
|| || || ||||| || ||| || || || || || |||| | || ||
Sbjct 1741 TCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGT----GTCTGAGCTTTCCACCTC 1796
Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| || | || || || || ||||| ||||| ||||| |||||
Sbjct 1797 GAGGGTGATTGTCTTTCCCGTGAGAGTCTTAACAAAAATCTGCAT 1841
>seq12662
Length=5898
Score = 96.9 bits (106), Expect = 3e-14
Identities = 159/225 (71%), Gaps = 12/225 (5%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
||| | ||| |||||||||||||| ||| | ||| || ||||||||||| |||||
Sbjct 3479 GAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGG--ATGTTGTAATCAGCGAGAGTC 3422
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
|| || || || || |||||||| || ||||| || |||||||| || ||||| ||
Sbjct 3421 CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCC 3362
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTC 563429
|| || || ||||| || ||| || || || || || |||| | || ||
Sbjct 3361 TCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGT----GTCTGAGCTTTCCACCTC 3306
Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| || | || || || || ||||| ||||| ||||| |||||
Sbjct 3305 GAGGGTGATTGTCTTTCCCGTGAGAGTCTTAACAAAAATCTGCAT 3261
>seq8506
Length=8498
Score = 96.9 bits (106), Expect = 3e-14
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
|| || || || || || |||||||| || |||||||||||||| || ||||| |||
Sbjct 7630 ACAGTTCCTGCTTACTTCAATGACTCTCAGCGTCAAGCTACTAAGGACGCTGGTGTGATT 7689
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
||||| | ||||| | ||||| ||||| || |||||||| || || |||| |||||
Sbjct 7690 GCTGGTTTGAATGTGATGCGTATCATCAACGAGCCTACTGCAGCAGCCATTGCCTATGGT 7749
Query 550529 CTTGATAA 550536
||||| ||
Sbjct 7750 CTTGACAA 7757
>seq27532
Length=1859
Score = 91.5 bits (100), Expect = 1e-12
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| ||||| || || || ||||| || ||||||||||| || || ||||| ||
Sbjct 869 ACTGTCCCAGCTTACTTCAACGACTCTCAGCGTCAAGCTACAAAGGACGCTGGTGTGATC 928
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || || ||||| | ||||| ||||| || || |||||||| || |||| |||||
Sbjct 929 GCCGGTCTGAATGTGATGCGTATCATCAACGAGCCGACTGCTGCAGCCATTGCTTATGGT 988
Query 550529 CTTGATAA 550536
||||| ||
Sbjct 989 CTTGACAA 996
>seq964
Length=27231
Score = 89.7 bits (98), Expect = 4e-12
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352
||||||||||| || | || | | ||| || || ||||| ||||| || || || ||
Sbjct 9674 ATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAAGATGAGCCTC 9615
Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412
||||| || |||||||| ||||| || || || || || || || || || |||
Sbjct 9614 TGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTA 9555
Query 563413 TCAGTG-TGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471
|| | | | || ||||||||| | || || || || |||||||| |||||||||||
Sbjct 9554 TCGGAGCTCTCGAC-TTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTG 9496
Query 563472 CAT 563474
|||
Sbjct 9495 CAT 9493
>seq5834
Length=11305
Score = 87.8 bits (96), Expect = 1e-11
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054
||||| |||||| | || || || || ||||||||||||| | |||||| | |||
Sbjct 1935 ATAGGGATAGATCTTGGTACTACTTACTCATGTGTTGGTGTTTACAAGAATGGTCATGTT 1876
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
|| || ||||||||||| ||||| ||| | | ||| || || | ||| |||||| ||
Sbjct 1875 GAGATCATTGCCAATGACCAAGGAAACCGTATTACACCTTCGTGGGTTGGTTTCACTGAC 1816
Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174
| ||| | ||||||| || || || | || || ||| ||||||| | |||
Sbjct 1815 AATGAGAGGCTCATTGGTGAGGCTGCTAAGAACCAGGCGGCTGTTAATCCTGAGAGGACT 1756
Query 550175 ATTTTTGATGCTAAACGTTTAATTGG 550200
| ||||||| || | || |||||
Sbjct 1755 GTCTTTGATGTCAAGAGATTGATTGG 1730
>seq38054
Length=942
Score = 86.0 bits (94), Expect = 5e-11
Identities = 268/413 (65%), Gaps = 4/413 (1%)
Strand=Plus/Minus
Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTG 552237
|||||||||||| | | || |||| |||| || || ||||| || || || || |
Sbjct 467 TTCAATGGTAAAGAGCTC--TGCAAGTCCATTAACCCTGACGAGGCCGTGGCTTACGGAG 410
Query 552238 CCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTAC 552297
| || |||||| |||||||||| || || | || || | ||| | || | |
Sbjct 409 CAGCTGTTCAAGGAGCTATTCTTAGCGGCGAAGGGAACGAGAAGGTGCAAGACCTTCTTC 350
Query 552298 TTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATC 552357
| | || || |||||||| ||||| ||| | ||||| | || || | |||||||
Sbjct 349 TGTTGGACGTGACTCCTCTCTCTCTCGGTCTCGAAACCGCCGGTGGAGTCATGACTACGT 290
Query 552358 TTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAG 552417
| ||| | || || ||||| || || || || | || || || || || || |
Sbjct 289 TGATCCAGAGGAACACTACGATCCCCACCAAGAAGGAACAGGTCTTCTCCACTTACTCTG 230
Query 552418 ATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATA 552477
| || || ||| ||| |||||| | | ||||| || ||| || ||||| |
Sbjct 229 ACAACCAGCCTGGTGTGTTGATTCAAGTCTACGAAGGTGAGAGAGCCAGAACCAAAGACA 170
Query 552478 ATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGC 552537
| || | || || | || | | || || ||||||||||| ||||| || || |
Sbjct 169 ACAACCTCCTCGGAAAATTCGAGCTCTCTGGCATCCCTCCTGCTCCACGTGGCGTCCCTC 110
Query 552538 AAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590
| || ||| ||||| ||||| ||||| || || ||||||| |||||
Sbjct 109 AGATCACAGTCTGCTTCGACATCGACGCCAACGGGATCCTGAATGTCTCTGCT 57
>seq9117
Length=8019
Score = 86.0 bits (94), Expect = 5e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
|| || || || || ||||||||||| || | ||||| ||||||||||| | |||
Sbjct 3831 ACCGTGCCTGCTTACTTTAATGACTCGCAGAGGACGGCTACGAAAGATGCTGGGAGGATT 3890
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
||||| | | |||||||||||||||||||| || || |||||| | | || |||||
Sbjct 3891 GCTGGGTTGGAAGTTCTTCGTATTATCAATGAGCCCACGGCTGCTTCTTTGGCTTATGGG 3950
Query 550529 CTTGA 550533
||||
Sbjct 3951 TTTGA 3955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4025872679898680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |