Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19602 165 7e-35 seq3401 138 9e-27 seq5476 120 2e-21 seq4396 114 1e-19 seq210 113 4e-19 seq533 109 4e-18 seq11485 104 2e-16 seq4589 104 2e-16 seq30157 102 7e-16 seq257 102 7e-16 seq24793 96.9 3e-14 seq12662 96.9 3e-14 seq8506 96.9 3e-14 seq27532 91.5 1e-12 seq964 89.7 4e-12 seq5834 87.8 1e-11 seq38054 86.0 5e-11 seq9117 86.0 5e-11 >seq19602 Length=3420 Score = 165 bits (182), Expect = 7e-35 Identities = 549/842 (65%), Gaps = 18/842 (2%) Strand=Plus/Minus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 ||||| ||| ||||| || |||||| ||||| ||||||||||||| |||||| Sbjct 1378 GAAGAAGGTATCTTTGAGGTGAAAGCTACCGCCGGAGACACTCATCTTGGTGGTGAAGAT 1319 Query 551817 TTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACGAAAAAACAA--AGT 551872 ||||| || ||| |||| | ||| | |||| |||| ||||| | || | ||| || Sbjct 1318 TTTGACAACAGAATGGTCAACCAT--TTTGTTCAAGAGTTTAAGAGGAAGAGCAAGAAGG 1261 Query 551873 TGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAA 551932 || || | | | | | ||||||| | | | || || || ||||| |||||||| Sbjct 1260 ACAT-TAGCGGTAACC-CTAGAGCTCTTAGGAGGTTGAGGACGGCCTGCGAGAGAGCCAA 1203 Query 551933 ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAAT 551992 | ||||||| || | |||||||| || || | || || | |||||||| || Sbjct 1202 GAGGACTCTTTCTTCCACCGCGCAAACCACCATCGAGATTGACTCTCTCTTTGAGGGGAT 1143 Query 551993 TGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAG 552052 ||||| || | | | | | || | ||||| || | |||||| || || Sbjct 1142 TGATTTCTATTCTGCACTCACACGTGCTAGGTTTGAGGAACTCAACATTGATCTTTTCAG 1083 Query 552053 AAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAGATTCAAAGATTGATAAATCCAAAG 552111 || || || || || || |||| | || | ||| | ||||| || || || | Sbjct 1082 GAAGTGTATGGAGCCTGTTGAG-AAGTGTCTACGTGATGCTAAGATGGACAAGAGCACGG 1024 Query 552112 TACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT-- 552169 | ||||| |||| ||||| ||||| |||||| | || || ||| ||| | | | Sbjct 1023 TCCATGATGTTGTACTTGTCGGTGGTTCTACACGTATCCCCAAAGTTCAACAGCTTCTCC 964 Query 552170 AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTT 552227 ||| | | |||||||||||| | | || |||| |||| || || ||||||||| Sbjct 963 AAGATTTC--TTCAATGGTAAAGAGCTC--TGCAAGTCCATTAACCCTGACGAGGCTGTT 908 Query 552228 GCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAA 552287 || |||||||| || |||| | |||||||| || || |||| || | ||| Sbjct 907 GCTTATGGTGCAGCGGTTCAGGGTGCTATTCTAAGCGGTGAAGGGAATGAGAAGGTGCAA 848 Query 552288 AATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATT 552347 | || |||| | || || ||||| || ||||||||| | ||||||| || || | Sbjct 847 GACCTTCTACTCTTGGACGTGACTCCCCTTTCTCTTGGTCTTGAAACAGCCGGTGGAGTC 788 Query 552348 ATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCT 552407 ||||| | | ||| | ||||| || || ||||| || || | || || ||| Sbjct 787 ATGACCACCTTGATCCAGAGAAACACAACCATTCCAACCAAGAAGGAACAGGTCTTCTCT 728 Query 552408 ACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTC 552467 || || ||||| || || ||| ||| |||||| | | ||||| || | | Sbjct 727 ACTTACTCAGACAACCAGCCTGGTGTGTTGATTCAAGTCTACGAAGGTGAGATAGCCAGA 668 Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || ||||| || || | || || | || | | ||||| ||||| ||||| ||| Sbjct 667 ACCAAAGACAACAACCTCCTCGGAAAGTTCGAGCTCTCTGGTATCCCTCCGGCTCCCCGT 608 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || || || || ||| |||||| || ||||| || || || | |||||| || Sbjct 607 GGTGTCCCTCAGATCACAGTGTGTTTCGACATTGATGCAAACGGTATACTCAATGTGTCT 548 Query 552588 GC 552589 || Sbjct 547 GC 546 >seq3401 Length=15652 Score = 138 bits (152), Expect = 9e-27 Identities = 443/682 (65%), Gaps = 8/682 (1%) Strand=Plus/Minus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 || ||||| || ||||| ||||| || | | ||||| || | |||| || ||||| Sbjct 10159 CTGAGAACGGCCTGCGAGAGAGCGAAGAGGACGCTTTCTTCCACTGCTCAGACGACTATC 10100 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 || | ||||| || ||||| |||| | | || | || ||| | || | ||| Sbjct 10099 GAGATCGATTCTTTGCACGAGGGTGTTGACTTCTACGCGACGATATCGCGTGCGAGGTTT 10040 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086 || || || ||||| || || || || || || || || ||||||| ||| Sbjct 10039 GAGGAGATGAACATGGATCTGTTCAGGAAGTGTATGGACCCCGTGGAGAAAGTTTTGAGA 9980 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||| ||||||| | |||||||| | || |||||||| ||||| || || Sbjct 9979 GATGCTAAGCTTGATAAGAGCCGTGTACATGAGGTGGTTCTTGTTGGAGGATCGACGAGG 9920 Query 552147 ATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 || ||||| |||| | | || ||| ||| || ||| || || | | || || Sbjct 9919 ATACCTAAGATTCAGCAGCTTTTGCAAGA-CTTCTT-CAACGGGAAGGAGCTC--TGCAA 9864 Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | | |||| || || || ||||| ||||| || || || |||| || || ||||| | Sbjct 9863 GAGCATTAACCCTGACGAAGCTGTCGCCTACGGAGCTGCGGTTCAGGCGGCGATTCTGAC 9804 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 ||| || || || | ||| ||||| | ||| | || || | || || || Sbjct 9803 TGGCGAAGGAAGCGACAAGGTGCAAGATATTCTGCTTCTCGACGTGGCGCCGCTGAGCCT 9744 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 ||| | || || | ||| ||| | ||| || | ||| || || || || |||| Sbjct 9743 TGGGATCGAGACGGCTGGTGGTGTGATGTCTGTGTTGATCCCGAGGAACACGACGGTTCC 9684 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 |||||| || | || || || || ||| | || || || | | ||| || || Sbjct 9683 TTGTAAGAAGGAGCAAGTGTTCTCCACCTATGCGGACAACCAGCCGGGGGTTCTGATCCA 9624 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502 | | | |||||||| || || ||||| || || | || || || ||| | | Sbjct 9623 AGTCTACGAAGGAGAGCGAGCGAGGACGAAAGACAACAACCTTCTCGGAACGTTTGAGCT 9564 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562 |||||||||||||||| || |||||||| || || ||| | ||| ||||| || || Sbjct 9563 TAAAGGTATTCCTCCTGCGCCGCGTGGAGTCCCTCAGATTAATGTTTGCTTCGACATGGA 9504 Query 552563 TGCCAATGGAATTTTGAATGTG 552584 |||||||| || ||||| ||| Sbjct 9503 CGCCAATGGGATCTTGAACGTG 9482 >seq5476 Length=11800 Score = 120 bits (132), Expect = 2e-21 Identities = 337/516 (65%), Gaps = 1/516 (0%) Strand=Plus/Plus Query 552076 AAGT-TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 |||| ||| ||||| | ||||| ||||| || || ||||| ||||||| |||||| Sbjct 10305 AAGTGTTTGAGAGACGCGAAGATGGATAAGAGTAATGTTCATGACGTTGTGCTCGTTGGT 10364 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAA 552194 || || || || || ||||| ||| | | || || ||| ||||| || | Sbjct 10365 GGGTCCACTAGGATCCCTAAGGTTCAGCAGCTTTTGCAGGATTTTTTTAATGGGAAGGAG 10424 Query 552195 TTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCT 552254 | | | ||| |||| || || ||||||||||| ||||| || || |||| || || Sbjct 10425 CTTTGTAAGAGTATTAACCCCGACGAGGCTGTTGCGTATGGCGCGGCGGTTCAGGCGGCG 10484 Query 552255 ATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCT 552314 ||| | || || |||| || | ||| || | | ||| | |||||||| ||| Sbjct 10485 ATTTTGAGCGGGGAAGGGAATGAGAAGGTTCAAGATTTGTTGCTTCTTGATGTTACGCCT 10544 Query 552315 CTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACT 552374 | ||| | || || || || | ||| ||| | |||||| | | || || || || Sbjct 10545 TTGTCTTTGGGGTTGGAGACTGCTGGTGGTGTGATGACTGTTTTGATTCCGAGGAACACA 10604 Query 552375 ACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTT 552434 || ||||| |||||| | | || || || ||||| || || || | | |||| Sbjct 10605 ACGATTCCGACTAAAAAGGAGCAGATCTTCTCGACTTATTCGGACAACCAGCCCGGTGTT 10664 Query 552435 ACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACT 552494 || ||| | | ||||||||| ||| || |||||||| || | | || | Sbjct 10665 TTGATCCAAGTCTATGAAGGAGAGAGAGCGAGGACGAAAGATAACAACCTTTTGGGGAAG 10724 Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 ||| | | ||||| |||||||| || || || || ||||| || || ||| Sbjct 10725 TTTGAGCTGAGTGGTATCCCTCCTGCGCCACGAGGTGTTCCGCAGATCACTGTGTGTTTT 10784 Query 552555 GATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 |||||||| || ||||| || ||||| ||| | ||| Sbjct 10785 GATATCGACGCTAATGGTATCTTGAACGTGTCGGCT 10820 >seq4396 Length=13502 Score = 114 bits (126), Expect = 1e-19 Identities = 163/225 (72%), Gaps = 12/225 (5%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| | ||| |||||||||||||| ||| | ||||| || ||||| ||||| ||||| Sbjct 12049 GAGCCTGAGGACAAGATGAAGGGTCGACTCTTTTTGG--ATGTTGTAGTCAGCGAGAGTA 11992 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||||||||| || ||||| || ||||| || |||||||| || ||||| ||| Sbjct 11991 CGCCCATCTTCAAGTTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCT 11932 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTC 563429 || || || ||||| || ||| || || || || || |||| | || || Sbjct 11931 TCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGT----GTCTGAGCTTTCCACCTC 11876 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || || || ||||| |||||||| || ||||| Sbjct 11875 GAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAATATCTGCAT 11831 >seq210 Length=42965 Score = 113 bits (124), Expect = 4e-19 Identities = 340/525 (65%), Gaps = 0/525 (0%) Strand=Plus/Plus Query 552060 ATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAA 552119 || || || || || | ||| | ||||| |||||||||| || | || || || Sbjct 16084 ATGGACCCCGTGGAGAAGGTTCTTAGAGACGCAAAGATTGACAAGAACCGTGTCCACGAG 16143 Query 552120 ATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTAT 552179 | || |||||||| ||||| || || ||||| || |||| | | || || Sbjct 16144 GTGGTTCTTGTTGGAGGATCCACGAGGATTCCGAAGATTCAGCAGCTTTTGCAGGATTTC 16203 Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239 ||||| || || | | | | || |||| || ||||| |||||||| ||||| ||| Sbjct 16204 TTCAACGGGAAGGAGCTTTGTAAGAGCATTAACCCTGATGAAGCTGTTGCGTATGGAGCC 16263 Query 552240 GCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTT 552299 || | || ||||| ||||| |||| || ||| || | || || | | ||| Sbjct 16264 GCGGTGCAGGCAGCGATTCTGACTGGTGAAGGGAGTGATAAGGTGCAGGATCTGCTGCTT 16323 Query 552300 GTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTT 552359 | || || | || | |||||| ||||| || | ||| || | |||||| | Sbjct 16324 CTTGACGTGGCGCCGTTGAGTCTTGGATTAGAGACGGCTGGTGGGGTGATGACTGTGTTG 16383 Query 552360 ATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGAT 552419 ||| || || || || |||||||||| || | || || || |||||||| || Sbjct 16384 ATCCCGAGGAACACGACGGTTCCTTGTAAGAAGGAGCAGGTGTTCTCCACGTATTCGGAC 16443 Query 552420 AATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAAT 552479 ||||| | | |||| |||||| ||| |||||||| | || | |||||| Sbjct 16444 AATCAGCCGGGTGTTTTGATTCAAGTTTACGAAGGAGAGCGTGCGAGGACGAGAGATAAC 16503 Query 552480 AATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAA 552539 || | || || || ||| | | | || || ||||||||||| ||||| || || || Sbjct 16504 AACCTTCTCGGAACGTTTGAGCTCAAGGGGATCCCTCCTGCTCCGCGTGGGGTTCCTCAG 16563 Query 552540 ATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 || | || ||| ||||| || || || || || ||||| ||| Sbjct 16564 ATCAATGTCTGTTTTGATATTGACGCTAACGGGATCTTGAACGTG 16608 >seq533 Length=33188 Score = 109 bits (120), Expect = 4e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | || || || ||||| || || || ||||| ||||| || | ||||| Sbjct 26731 AAGTAACCAAGGCTGTTATTACTGTGCCTGCTTACTTTAACGACTCGCAGAGGACAGCTA 26790 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 ||||||||||||| || |||||||| | ||||||| |||||||||||||| || |||| Sbjct 26791 CTAAAGATGCTGGTCGCATTGCTGGTTTGGATGTTCTACGTATTATCAATGAGCCCACTG 26850 Query 550509 CTGCTGCACTTGCATATGGACTTGA 550533 ||||| | | || ||||| |||| Sbjct 26851 CTGCTTCTTTGGCTTATGGTTTTGA 26875 >seq11485 Length=6519 Score = 104 bits (114), Expect = 2e-16 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || |||||||| ||| || || |||||||||||| || || || | Sbjct 4924 GAGACGGAGGACGAGATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCG 4865 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 | ||| ||||| ||||| || || || || ||||| ||||| || |||||||||||||| Sbjct 4864 TCCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTC 4805 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 || || || || ||| ||| || ||||| || || | | | || | ||| Sbjct 4804 CTTGTCCTGGATCTTTGCTTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGT 4745 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || || || | ||| || || ||||| |||||| Sbjct 4744 GATGGTCTTGCCTGTCAAAGTCTTGACAAAAATCTGCATA 4705 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||||| ||| || || || ||||||||||| | ||| | Sbjct 5151 AGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGA 5092 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || ||||| || || || || ||||| ||||| || ||||| || ||||| Sbjct 5091 CCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCC 5032 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGT 563435 || || ||||| || ||| || || || || |||| | | || ||| || || Sbjct 5031 TTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCAC-TTCAAGGGT 4973 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || |||||||| || || || || |||||||| |||||| Sbjct 4972 AATGGTTTTACCGGTGAGTGTCTTGACGAAAATCTGCATA 4933 >seq4589 Length=13169 Score = 104 bits (114), Expect = 2e-16 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || ||||| ||| ||||||||| |||| | |||||| | ||| Sbjct 9812 ATAGGGATAGATCTTGGTACCACCTATTCTTGTGTTGGCGTTTACAAGAATGGTCATGTT 9871 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||||||||||| ||||| ||| | | |||||| || | ||| ||||||| || Sbjct 9872 GAAATCATTGCCAATGACCAAGGCAACCGTATTACTCCTTCCTGGGTTGCTTTCACCGAC 9931 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCC 550164 | ||| | ||||||| || || || | || || ||| |||||| Sbjct 9932 TCCGAAAGACTCATTGGTGAGGCTGCTAAGAACCAGGCTGCTGTTAATCC 9981 >seq30157 Length=1524 Score = 102 bits (112), Expect = 7e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || ||||| || |||||||||||||| | || ||| | ||| Sbjct 576 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAACGGTCATGTT 517 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||||| ||||||||||| ||||||||| | | |||||| |||| ||| ||||||| || Sbjct 516 GAAATCATTGCCAATGACCAAGGTAACCGTATTACTCCTTCTTGGGTTGCTTTCACCGA 458 >seq257 Length=40415 Score = 102 bits (112), Expect = 7e-16 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 550387 AGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 ||||| |||| | || || | ||||| || || || ||||||||||| || | | Sbjct 37860 AGAAGGTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGACTCGCAGAGGACGG 37919 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 |||||||||||||||| ||||||||||| | | |||||||||||||| ||||| || | Sbjct 37920 CTACTAAAGATGCTGGTCGTATTGCTGGGTTGGAGGTTCTTCGTATTATTAATGAGCCCA 37979 Query 550506 CTGCTGCTGCACTTGCATATGGACTTGA 550533 | |||||| | | || ||||| |||| Sbjct 37980 CGGCTGCTTCGTTGGCTTATGGGTTTGA 38007 >seq24793 Length=2311 Score = 96.9 bits (106), Expect = 3e-14 Identities = 159/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| | ||| |||||||||||||| ||| | ||| || ||||||||||| ||||| Sbjct 1623 GAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGG--ATGTTGTAATCAGCGAGAGTC 1680 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || || || || || |||||||| || ||||| || |||||||| || ||||| || Sbjct 1681 CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCC 1740 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTC 563429 || || || ||||| || ||| || || || || || |||| | || || Sbjct 1741 TCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGT----GTCTGAGCTTTCCACCTC 1796 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || || || ||||| ||||| ||||| ||||| Sbjct 1797 GAGGGTGATTGTCTTTCCCGTGAGAGTCTTAACAAAAATCTGCAT 1841 >seq12662 Length=5898 Score = 96.9 bits (106), Expect = 3e-14 Identities = 159/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| | ||| |||||||||||||| ||| | ||| || ||||||||||| ||||| Sbjct 3479 GAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGG--ATGTTGTAATCAGCGAGAGTC 3422 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || || || || || |||||||| || ||||| || |||||||| || ||||| || Sbjct 3421 CTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCC 3362 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTC 563429 || || || ||||| || ||| || || || || || |||| | || || Sbjct 3361 TCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGT----GTCTGAGCTTTCCACCTC 3306 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || || || ||||| ||||| ||||| ||||| Sbjct 3305 GAGGGTGATTGTCTTTCCCGTGAGAGTCTTAACAAAAATCTGCAT 3261 >seq8506 Length=8498 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || |||||||| || |||||||||||||| || ||||| ||| Sbjct 7630 ACAGTTCCTGCTTACTTCAATGACTCTCAGCGTCAAGCTACTAAGGACGCTGGTGTGATT 7689 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | ||||| | ||||| ||||| || |||||||| || || |||| ||||| Sbjct 7690 GCTGGTTTGAATGTGATGCGTATCATCAACGAGCCTACTGCAGCAGCCATTGCCTATGGT 7749 Query 550529 CTTGATAA 550536 ||||| || Sbjct 7750 CTTGACAA 7757 >seq27532 Length=1859 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| || || || ||||| || ||||||||||| || || ||||| || Sbjct 869 ACTGTCCCAGCTTACTTCAACGACTCTCAGCGTCAAGCTACAAAGGACGCTGGTGTGATC 928 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || ||||| | ||||| ||||| || || |||||||| || |||| ||||| Sbjct 929 GCCGGTCTGAATGTGATGCGTATCATCAACGAGCCGACTGCTGCAGCCATTGCTTATGGT 988 Query 550529 CTTGATAA 550536 ||||| || Sbjct 989 CTTGACAA 996 >seq964 Length=27231 Score = 89.7 bits (98), Expect = 4e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 ||||||||||| || | || | | ||| || || ||||| ||||| || || || || Sbjct 9674 ATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAAGATGAGCCTC 9615 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| || |||||||| ||||| || || || || || || || || || ||| Sbjct 9614 TGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTA 9555 Query 563413 TCAGTG-TGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | | | || ||||||||| | || || || || |||||||| ||||||||||| Sbjct 9554 TCGGAGCTCTCGAC-TTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTG 9496 Query 563472 CAT 563474 ||| Sbjct 9495 CAT 9493 >seq5834 Length=11305 Score = 87.8 bits (96), Expect = 1e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 ||||| |||||| | || || || || ||||||||||||| | |||||| | ||| Sbjct 1935 ATAGGGATAGATCTTGGTACTACTTACTCATGTGTTGGTGTTTACAAGAATGGTCATGTT 1876 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || ||||||||||| ||||| ||| | | ||| || || | ||| |||||| || Sbjct 1875 GAGATCATTGCCAATGACCAAGGAAACCGTATTACACCTTCGTGGGTTGGTTTCACTGAC 1816 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 | ||| | ||||||| || || || | || || ||| ||||||| | ||| Sbjct 1815 AATGAGAGGCTCATTGGTGAGGCTGCTAAGAACCAGGCGGCTGTTAATCCTGAGAGGACT 1756 Query 550175 ATTTTTGATGCTAAACGTTTAATTGG 550200 | ||||||| || | || ||||| Sbjct 1755 GTCTTTGATGTCAAGAGATTGATTGG 1730 >seq38054 Length=942 Score = 86.0 bits (94), Expect = 5e-11 Identities = 268/413 (65%), Gaps = 4/413 (1%) Strand=Plus/Minus Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTG 552237 |||||||||||| | | || |||| |||| || || ||||| || || || || | Sbjct 467 TTCAATGGTAAAGAGCTC--TGCAAGTCCATTAACCCTGACGAGGCCGTGGCTTACGGAG 410 Query 552238 CCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTAC 552297 | || |||||| |||||||||| || || | || || | ||| | || | | Sbjct 409 CAGCTGTTCAAGGAGCTATTCTTAGCGGCGAAGGGAACGAGAAGGTGCAAGACCTTCTTC 350 Query 552298 TTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATC 552357 | | || || |||||||| ||||| ||| | ||||| | || || | ||||||| Sbjct 349 TGTTGGACGTGACTCCTCTCTCTCTCGGTCTCGAAACCGCCGGTGGAGTCATGACTACGT 290 Query 552358 TTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAG 552417 | ||| | || || ||||| || || || || | || || || || || || | Sbjct 289 TGATCCAGAGGAACACTACGATCCCCACCAAGAAGGAACAGGTCTTCTCCACTTACTCTG 230 Query 552418 ATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATA 552477 | || || ||| ||| |||||| | | ||||| || ||| || ||||| | Sbjct 229 ACAACCAGCCTGGTGTGTTGATTCAAGTCTACGAAGGTGAGAGAGCCAGAACCAAAGACA 170 Query 552478 ATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGC 552537 | || | || || | || | | || || ||||||||||| ||||| || || | Sbjct 169 ACAACCTCCTCGGAAAATTCGAGCTCTCTGGCATCCCTCCTGCTCCACGTGGCGTCCCTC 110 Query 552538 AAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 | || ||| ||||| ||||| ||||| || || ||||||| ||||| Sbjct 109 AGATCACAGTCTGCTTCGACATCGACGCCAACGGGATCCTGAATGTCTCTGCT 57 >seq9117 Length=8019 Score = 86.0 bits (94), Expect = 5e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || ||||||||||| || | ||||| ||||||||||| | ||| Sbjct 3831 ACCGTGCCTGCTTACTTTAATGACTCGCAGAGGACGGCTACGAAAGATGCTGGGAGGATT 3890 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | | |||||||||||||||||||| || || |||||| | | || ||||| Sbjct 3891 GCTGGGTTGGAAGTTCTTCGTATTATCAATGAGCCCACGGCTGCTTCTTTGGCTTATGGG 3950 Query 550529 CTTGA 550533 |||| Sbjct 3951 TTTGA 3955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025872679898680