Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 325 1e-84
seq18917 183 9e-42
seq49459 82.4 2e-11
>seq43812
Length=736
Score = 325 bits (360), Expect = 1e-84
Identities = 410/563 (73%), Gaps = 0/563 (0%)
Strand=Plus/Plus
Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281
|| ||||| | || || | || ||||| |||||| |||||| |||||||| || |||
Sbjct 3 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 62
Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341
||||||||||| ||||||||| | |||||||| || || || || || || |||||||||
Sbjct 63 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 122
Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401
|| || ||| ||||| ||||| || ||||| || | || || ||||||||| ||
Sbjct 123 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 182
Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461
|||||| ||||| | || ||||| ||||| | | || ||| | ||
Sbjct 183 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 242
Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521
|| | || || ||||| ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 243 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 302
Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581
|||| || || || ||||| ||||| || || |||||| | |||||||| | ||
Sbjct 303 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 362
Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641
|||||||||| || || || ||| | || || | ||||| | || ||||| || |||
Sbjct 363 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 422
Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701
||||||||||| || || ||||| |||||||| ||| | | ||| | || |||
Sbjct 423 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 482
Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761
||||||||| | | ||||| |||||||| || | ||||||||||| || |||||||||
Sbjct 483 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 542
Query 26762 CATAACTTTCCACTTGACTTAGC 26784
|| ||||| || || ||| ||||
Sbjct 543 CACAACTTCCCTCTAGACCTAGC 565
>seq18917
Length=3610
Score = 183 bits (202), Expect = 9e-42
Identities = 281/401 (70%), Gaps = 0/401 (0%)
Strand=Plus/Plus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|| ||| | ||| | || ||||| || |||||||| || | |||||||| || || |
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921
||||| || |||| | | || ||| | |||||| | || ||||| || || ||
Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312
Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372
Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041
|| || ||||| || | | || | ||| || || || | |||||||| ||||||
Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432
Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101
|||||||||| | | || || ||||||||||| || || || ||| |||| ||| |
Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492
Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161
| ||||| ||| | || ||||| ||| || | |||||||||| || | |
Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552
Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACC 26202
|| || ||| | || ||||| |||||||||| |||| ||
Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 3593
>seq49459
Length=611
Score = 82.4 bits (90), Expect = 2e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311
|||||| |||||| |||||||| || |||||||||||||| ||||||||| | ||||||
Sbjct 486 AGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTC 545
Query 26312 CAAGCAGAACATAATATA 26329
|| || || || || |||
Sbjct 546 CAGGCTGAGCACAACATA 563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146613612516768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |