Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 367 4e-97
seq18917 208 2e-49
seq49459 80.6 8e-11
>seq43812
Length=736
Score = 367 bits (406), Expect = 4e-97
Identities = 428/578 (74%), Gaps = 0/578 (0%)
Strand=Plus/Minus
Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019
||||||| |||| |||||||| || ||||||||||| || ||||| ||||||||||||||
Sbjct 578 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 519
Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079
||| || | || |||||||||| ||| ||||||||||| | || | ||| |
Sbjct 518 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 459
Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139
|||||| ||||| || ||||| || || || || || || ||||||||||| | ||
Sbjct 458 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 399
Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199
| ||| |||| ||| || | || |||||||| || | ||||||||||||| ||
Sbjct 398 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 339
Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259
||| || || |||||||| |||||||| | || ||||| || || ||||| || ||
Sbjct 338 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 279
Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319
|||||| || || ||||||||||| |||||| | || || | || ||||||| |
Sbjct 278 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTC 219
Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379
|| ||||| | || | ||||| || | | || ||||||||| |||| |
Sbjct 218 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGA 159
Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439
|| |||||||| || || ||||| | ||| || || || |||||||| || ||||| ||
Sbjct 158 GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 99
Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499
||||| || |||| |||||| |||||||| || || || || |||||||||||||||||
Sbjct 98 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 39
Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAG 36537
||||| ||||| |||| ||||||| ||||| ||||
Sbjct 38 AAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 1
>seq18917
Length=3610
Score = 208 bits (230), Expect = 2e-49
Identities = 294/413 (71%), Gaps = 0/413 (0%)
Strand=Plus/Minus
Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602
|| ||||||||||| |||||||| || ||| ||||| || | |||||| || | ||
Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546
Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662
||||||||||| | || |||| ||| | | ||||| | |||||| | |||||
Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486
Query 36663 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 36722
|||| ||| || || ||||| |||| ||| || || | || ||||||||||||||| ||
Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426
Query 36723 TAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTT 36782
|| || || | ||| || || || | || | || || || || || || ||||||
Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366
Query 36783 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 36842
|| || || | | ||| || ||||| |||||||||||||| ||||| || ||||| |||
Sbjct 3365 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 3306
Query 36843 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 36902
|||| ||||| || | ||| | | ||| || || | | ||| ||||| | ||
Sbjct 3305 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACA 3246
Query 36903 CCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955
|||||||| || | || || ||||| | ||||| || | ||||| ||| ||
Sbjct 3245 CCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193
>seq49459
Length=611
Score = 80.6 bits (88), Expect = 8e-11
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 36429 ATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGC 36488
|| ||||| || ||||| || |||| |||||| |||||||| || || || || ||||||
Sbjct 562 ATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC 503
Query 36489 ATACCATCAGAGAAACT 36505
||||||||||| |||||
Sbjct 502 ATACCATCAGAAAAACT 486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150338746831128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |