Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 361 2e-95
seq18917 226 9e-55
seq49459 91.5 4e-14
seq293 86.0 2e-12
>seq43812
Length=736
Score = 361 bits (400), Expect = 2e-95
Identities = 418/563 (74%), Gaps = 0/563 (0%)
Strand=Plus/Minus
Query 5183 GACTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCC 5242
|||||| |||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||
Sbjct 577 GACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCC 518
Query 5243 ATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAG 5302
||||||||||| |||||||| | | ||| |||||||| || | | || |
Sbjct 517 ATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTA 458
Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362
||||| ||||| || ||||| || || || || || || ||||||||||| || ||
Sbjct 457 TCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCT 398
Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422
| || |||| ||| || | || || ||||||| || | ||||||||||||| |||
Sbjct 397 AAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGA 338
Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482
|||||| || |||||||| |||||||| | || ||||| || || ||||| || |||
Sbjct 337 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACA 278
Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542
||||| || |||||||| ||||| |||||| | || || | || ||| | |
Sbjct 277 ATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCT 218
Query 5543 GTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCT 5602
|| ||||| | || | |||||| || | | |||||||||||| || | |
Sbjct 217 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAG 158
Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662
|| |||||||| ||||| ||||| | |||||| || || |||||||| || ||||| ||
Sbjct 157 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 98
Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722
||||||||||| | ||||||||| |||||||||||||| || |||||||||||||||
Sbjct 97 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 38
Query 5723 AAACTTCCCTGTCCGAAAGGGTA 5745
|||||||| || || | |||||
Sbjct 37 AAACTTCCTTGACCAATTGGGTA 15
>seq18917
Length=3610
Score = 226 bits (250), Expect = 9e-55
Identities = 304/420 (72%), Gaps = 5/420 (1%)
Strand=Plus/Minus
Query 5760 AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATC 5819
||||| | || ||||| || ||||||||||| || |||||| || ||||| || | |
Sbjct 3609 AGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGAC 3551
Query 5820 TGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGA 5879
| ||||||||||||| | || |||| ||| || | ||||| | ||||| | |
Sbjct 3550 GGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAA 3491
Query 5880 CGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCA 5937
| | |||| || || || || ||||| ||||||||||| | ||| || ||||||||
Sbjct 3490 CAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGAT--GCAGCTTCCCA 3433
Query 5938 GATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGAT 5997
||| ||||| || || || ||||| || || | || | || ||| ||||| || ||
Sbjct 3432 GATCGGATAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAAT 3373
Query 5998 GTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGG 6057
|||||||| || || |||||||| | || |||||||| || || || || || |||||
Sbjct 3372 ATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGG 3313
Query 6058 GGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCAT 6117
|| ||||| | |||||| | ||||| | | ||||||||| || | | || |||||
Sbjct 3312 AGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCAT 3253
Query 6118 TAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
|| ||||||||||| || | || || ||||| | ||| ||||| | ||||| ||||||
Sbjct 3252 CAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193
>seq49459
Length=611
Score = 91.5 bits (100), Expect = 4e-14
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 5651 ATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGC 5710
|| ||||| || ||||||||||| | ||||||||| |||||||||||||| || ||||||
Sbjct 562 ATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC 503
Query 5711 ATACCATCACTGAAACTT 5728
||||||||| ||||||
Sbjct 502 ATACCATCAGAAAAACTT 485
>seq293
Length=39549
Score = 86.0 bits (94), Expect = 2e-12
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 5902 ATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961
|||||| ||||||||| | | | || ||||||||||| | ||| || || || |||||
Sbjct 26183 ATTGTATAGCCATTCACCAACAAATGCAGCTTCCCAGATTGAATAAAAATGCAAACCAAT 26124
Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021
|| | || | | | || ||| ||||| || || | ||||||||| || ||| |||
Sbjct 26123 AGCTGTAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGATATCG 26064
Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081
| | ||||||| || || | || || ||| || ||||| | |||||| | ||
Sbjct 26063 AGAAATAGGTTCACAAATACCACCAATATCTACTAAAGGAGCAGCAATGAATGCGATAAT 26004
Query 6082 AAATGCAGTAGTTGCGGT---TAAGAGTGCGGGTATCATTAAGACACCAAAC 6130
||| ||| | | |||| ||||| | || ||||| || |||||||||
Sbjct 26003 AAAAACAGAAACTACGGTCAATAAGA-TAAGG--ATCATCAAAACACCAAAC 25955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152532259397352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |