Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq43812 361 2e-95 seq18917 226 9e-55 seq49459 91.5 4e-14 seq293 86.0 2e-12 >seq43812 Length=736 Score = 361 bits (400), Expect = 2e-95 Identities = 418/563 (74%), Gaps = 0/563 (0%) Strand=Plus/Minus Query 5183 GACTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCC 5242 |||||| |||| ||||| || || ||||||||||||||||| ||||| ||||| |||||| Sbjct 577 GACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCC 518 Query 5243 ATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAG 5302 ||||||||||| |||||||| | | ||| |||||||| || | | || | Sbjct 517 ATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTA 458 Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 ||||| ||||| || ||||| || || || || || || ||||||||||| || || Sbjct 457 TCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCT 398 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || |||| ||| || | || || ||||||| || | ||||||||||||| ||| Sbjct 397 AAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGA 338 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 |||||| || |||||||| |||||||| | || ||||| || || ||||| || ||| Sbjct 337 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACA 278 Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542 ||||| || |||||||| ||||| |||||| | || || | || ||| | | Sbjct 277 ATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCT 218 Query 5543 GTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCT 5602 || ||||| | || | |||||| || | | |||||||||||| || | | Sbjct 217 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAG 158 Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || |||||||| ||||| ||||| | |||||| || || |||||||| || ||||| || Sbjct 157 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 98 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| Sbjct 97 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 38 Query 5723 AAACTTCCCTGTCCGAAAGGGTA 5745 |||||||| || || | ||||| Sbjct 37 AAACTTCCTTGACCAATTGGGTA 15 >seq18917 Length=3610 Score = 226 bits (250), Expect = 9e-55 Identities = 304/420 (72%), Gaps = 5/420 (1%) Strand=Plus/Minus Query 5760 AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATC 5819 ||||| | || ||||| || ||||||||||| || |||||| || ||||| || | | Sbjct 3609 AGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGAC 3551 Query 5820 TGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGA 5879 | ||||||||||||| | || |||| ||| || | ||||| | ||||| | | Sbjct 3550 GGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAA 3491 Query 5880 CGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCA 5937 | | |||| || || || || ||||| ||||||||||| | ||| || |||||||| Sbjct 3490 CAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGAT--GCAGCTTCCCA 3433 Query 5938 GATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGAT 5997 ||| ||||| || || || ||||| || || | || | || ||| ||||| || || Sbjct 3432 GATCGGATAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAAT 3373 Query 5998 GTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGG 6057 |||||||| || || |||||||| | || |||||||| || || || || || ||||| Sbjct 3372 ATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGG 3313 Query 6058 GGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCAT 6117 || ||||| | |||||| | ||||| | | ||||||||| || | | || ||||| Sbjct 3312 AGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCAT 3253 Query 6118 TAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||||||||| || | || || ||||| | ||| ||||| | ||||| |||||| Sbjct 3252 CAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193 >seq49459 Length=611 Score = 91.5 bits (100), Expect = 4e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 5651 ATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGC 5710 || ||||| || ||||||||||| | ||||||||| |||||||||||||| || |||||| Sbjct 562 ATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC 503 Query 5711 ATACCATCACTGAAACTT 5728 ||||||||| |||||| Sbjct 502 ATACCATCAGAAAAACTT 485 >seq293 Length=39549 Score = 86.0 bits (94), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 5902 ATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 |||||| ||||||||| | | | || ||||||||||| | ||| || || || ||||| Sbjct 26183 ATTGTATAGCCATTCACCAACAAATGCAGCTTCCCAGATTGAATAAAAATGCAAACCAAT 26124 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || | || | | | || ||| ||||| || || | ||||||||| || ||| ||| Sbjct 26123 AGCTGTAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGATATCG 26064 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | | ||||||| || || | || || ||| || ||||| | |||||| | || Sbjct 26063 AGAAATAGGTTCACAAATACCACCAATATCTACTAAAGGAGCAGCAATGAATGCGATAAT 26004 Query 6082 AAATGCAGTAGTTGCGGT---TAAGAGTGCGGGTATCATTAAGACACCAAAC 6130 ||| ||| | | |||| ||||| | || ||||| || ||||||||| Sbjct 26003 AAAAACAGAAACTACGGTCAATAAGA-TAAGG--ATCATCAAAACACCAAAC 25955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152532259397352