Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 367 4e-97
seq18917 205 3e-48
seq49459 80.6 8e-11
>seq43812
Length=736
Score = 367 bits (406), Expect = 4e-97
Identities = 430/581 (74%), Gaps = 0/581 (0%)
Strand=Plus/Minus
Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496
|| ||||||| ||| |||| ||| |||||||||||||| || ||||| |||||||||||
Sbjct 581 TGGAGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 522
Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556
|||||| || | || |||||||||| ||| ||||||||||| | || | ||| |
Sbjct 521 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 462
Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616
|||||| ||||| || ||||| || || || || || || ||||||||||| |
Sbjct 461 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 402
Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676
|| | ||| |||| ||| || | || |||||||| || | |||||||||||||
Sbjct 401 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 342
Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736
||| ||| || || |||||||| |||||||| | || ||||| || || ||||| ||
Sbjct 341 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 282
Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796
|||||||| || || ||||||||||| |||||| | || || | || |||||||
Sbjct 281 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATT 222
Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856
| || ||||| | || | ||||| || | | || ||||||||| ||||
Sbjct 221 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 162
Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916
| || |||||||| || || ||||| | ||| || || || |||||||| || |||||
Sbjct 161 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 102
Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976
|| ||||| || |||| |||||| |||||||| || || || || ||||||||||||||
Sbjct 101 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 42
Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAG 26017
||| ||||| ||||| |||| ||||||| ||||| ||||
Sbjct 41 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 1
>seq18917
Length=3610
Score = 205 bits (226), Expect = 3e-48
Identities = 293/413 (71%), Gaps = 0/413 (0%)
Strand=Plus/Minus
Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082
|| ||||||||||| |||||||| || ||| ||||| || | ||| || || | ||
Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546
Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142
||||||||||| | || |||| ||| | | || | | |||||| | |||||
Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486
Query 26143 AGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 26202
|||| ||| || |||||||| || | ||| || || | || ||||||||||||||| ||
Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426
Query 26203 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTT 26262
|| || || | ||| || || ||| | || | || || ||||| || || ||||||
Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366
Query 26263 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 26322
|| || || | | ||| || ||||| |||||||||||||| ||||| || ||||| |||
Sbjct 3365 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 3306
Query 26323 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 26382
|||| ||||| || | ||| | | ||| || || | | ||| ||||| | ||
Sbjct 3305 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACA 3246
Query 26383 CCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435
|||||||| || | || || ||||| | ||||| || | ||||| ||| ||
Sbjct 3245 CCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193
>seq49459
Length=611
Score = 80.6 bits (88), Expect = 8e-11
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 25909 ATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGC 25968
|| ||||| || ||||| || |||| |||||| |||||||| || || || || ||||||
Sbjct 562 ATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC 503
Query 25969 ATACCATCAGAGAAACT 25985
||||||||||| |||||
Sbjct 502 ATACCATCAGAAAAACT 486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151876763659632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |