Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq2241 120 2e-22
seq2790 100 2e-16
>seq2241
Length=19256
Score = 120 bits (132), Expect = 2e-22
Identities = 200/288 (69%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870
||||||| | || |||||||| || || | | |||| ||| || || || | ||
Sbjct 1758 CACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAG 1817
Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930
| || ||||| | |||| | || || ||||||||| || |||||||| || ||
Sbjct 1818 ATCACACACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 1877
Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990
|| || ||||| ||| | || | ||| || | ||||||||||||||| || || |||
Sbjct 1878 ACCAAGGCCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCAC 1937
Query 29991 GTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047
||| ||||| | ||| |||||||||||||||| ||||| || | || ||
Sbjct 1938 GTAGAACTGTGCAAACA---TGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGG 1994
Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095
|||||| || | | ||||| |||| || || || |||||| ||||
Sbjct 1995 GTTCCAAGCCGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 2042
>seq2790
Length=17423
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 29878 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 29937
|||||||| | ||| | || || || ||||| || |||||||| ||||| || ||
Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673
Query 29938 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 29997
||||| || | || | ||| || | ||||||||||||||||| | ||||| |||
Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733
Query 29998 TGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 30057
||| | ||||||| |||||||| ||||| || | ||| || ||||| ||
Sbjct 3734 TGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 3793
Query 30058 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095
||| || || |||| || || ||||||||| ||||
Sbjct 3794 GACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 3831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408295232892236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |