Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2241 120 2e-22 seq2790 100 2e-16 >seq2241 Length=19256 Score = 120 bits (132), Expect = 2e-22 Identities = 200/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 ||||||| | || |||||||| || || | | |||| ||| || || || | || Sbjct 1758 CACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACGAG 1817 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 1818 ATCACACACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 1877 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 || || ||||| ||| | || | ||| || | ||||||||||||||| || || ||| Sbjct 1878 ACCAAGGCCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCAC 1937 Query 29991 GTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047 ||| ||||| | ||| |||||||||||||||| ||||| || | || || Sbjct 1938 GTAGAACTGTGCAAACA---TGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGG 1994 Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 |||||| || | | ||||| |||| || || || |||||| |||| Sbjct 1995 GTTCCAAGCCGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 2042 >seq2790 Length=17423 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29878 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 29937 |||||||| | ||| | || || || ||||| || |||||||| ||||| || || Sbjct 3614 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAGA 3673 Query 29938 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 29997 ||||| || | || | ||| || | ||||||||||||||||| | ||||| ||| Sbjct 3674 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAGAAC 3733 Query 29998 TGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 30057 ||| | ||||||| |||||||| ||||| || | ||| || ||||| || Sbjct 3734 TGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 3793 Query 30058 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 ||| || || |||| || || ||||||||| |||| Sbjct 3794 GACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408295232892236