Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1703 134 1e-26
seq4396 129 5e-25
seq20570 116 3e-21
seq3737 113 4e-20
seq11485 107 2e-18
seq7348 102 6e-17
seq964 89.7 4e-13
>seq1703
Length=21771
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | || ||| || || || ||||| ||||||||||| || || ||||| || ||
Sbjct 18368 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGCA 18427
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| || |||| ||||| ||||| || ||||| ||||| | ||| || || || ||
Sbjct 18428 AGAGTCCTCCCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGG 18487
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| ||||| ||||| || || ||| | || | ||| || || | |||||
Sbjct 18488 ATCCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCCACC 18547
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | ||| | || || || || ||||| || ||||| ||||||||
Sbjct 18548 TCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 18594
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | || ||| || || || ||||| ||||| || || || ||||||||||||||
Sbjct 18824 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGCC 18883
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| || | ||||| || || || || | |||||| ||||| || ||
Sbjct 18884 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 18943
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| || || || || || ||| || | || | ||||| || |||||||
Sbjct 18944 ATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCCACC 19003
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || |||| || || ||||| | |||||| || || || |||||
Sbjct 19004 TCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCAT 19050
>seq4396
Length=13502
Score = 129 bits (142), Expect = 5e-25
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||||||||| || |||||||| || ||||| || |||| ||| | |||| || | |||
Sbjct 12034 ATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCAGCGAGAGTACGCCCATCTTCAAGTTG 11975
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || || || || | | ||| ||||| || ||||||||||| || || ||||| ||
Sbjct 11974 CTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTT 11915
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
||| || | || | ||||| || ||||||| || || |||| ||| || |||||
Sbjct 11914 GGCTTTAACGTTGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATCGTCTTTCCGGT 11855
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| ||| || || |||||||||||
Sbjct 11854 GAGAGTCTTAACGAATATCTGCAT 11831
>seq20570
Length=3172
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || | || ||| || || || ||||||||||| || || || || ||||| || ||
Sbjct 292 CCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 351
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||||| | || ||||| ||||| ||||| || || | | ||| ||||| || |||
Sbjct 352 AAGGTTCTCCCGTCCTCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGGA 411
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| || || || || || || || | || | |||||||| |||||||
Sbjct 412 ATCCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACC 471
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || |||| || || || || | |||||| || || ||||||||
Sbjct 472 TCGAGGGTGATTGTCTTTCCTGTGAGAGTTTTCACGAAGATCTGCAT 518
>seq3737
Length=14779
Score = 113 bits (124), Expect = 4e-20
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339
|||| || || |||||||| || | ||| ||| |||| || | |||||||| || || |
Sbjct 9320 CTTTGTGGATGTTGTAATCAGCAAGAGTCCTGCCATCTTCGAGCTGCTTACCGGCGAAGA 9379
Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399
|||| | ||| |||||||| || || ||||| ||||| || || || | | || | |
Sbjct 9380 TCAACCTCTGCTGATCGGGAGGGATACCTTCCTTATCGTGGATCTTGGCTGTAACGTTGT 9439
Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459
| | ||||| || |||| || || || |||| ||| || ||||| | ||| || || |
Sbjct 9440 CGATCGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTCTTTCCGGTAAGAGTCTTAACGA 9499
Query 101460 ATATCTGCAT 101469
||||||||||
Sbjct 9500 ATATCTGCAT 9509
>seq11485
Length=6519
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||| ||||| || || || ||||||||||| || | || | |||| || | ||
Sbjct 4909 ATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCGTCCATCCTCAAGCTG 4850
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||||| || || || | | ||| || || || ||||| ||||| || || || || ||
Sbjct 4849 TTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTT 4790
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
| ||| ||| | || | |||||| || | || || || | ||||| || ||||| ||
Sbjct 4789 TGCTTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCTGT 4730
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
||||| || ||||| ||||||||
Sbjct 4729 CAAAGTCTTGACAAAAATCTGCAT 4706
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
|||| || | | ||| | ||| || ||||| ||||| || || || || |||||||| |
Sbjct 5162 TTCCACCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAG 5103
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| | ||| | |||| || | || || || || || || | | ||| || || || |
Sbjct 5102 CCAAAGTCCGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAG 5043
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
| |||||||| || || ||||| || ||| ||| | || | |||||||| | ||||
Sbjct 5042 GGATGCCTTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCA 4983
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||||| || | ||||| ||||| | || || || || ||||||||
Sbjct 4982 CTTCAAGGGTAATGGTTTTACCGGTGAGTGTCTTGACGAAAATCTGCAT 4934
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| || || || || || || || ||||||||||| | || | | || || | ||
Sbjct 4681 ATGGAGAGTTGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTG 4622
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || || || || | | ||| || ||||| || |||||||| || || || || ||
Sbjct 4621 CTTCCCAGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTT 4562
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
| || ||| | |||| |||||| || | || || || ||||||| || ||||||||
Sbjct 4561 TGCCTTGACATTGTCTATAGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGT 4502
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| ||||| || || || |||||
Sbjct 4501 GAGTGTTTTCACGAAAATTTGCAT 4478
>seq7348
Length=9517
Score = 102 bits (112), Expect = 6e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 101264 AAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAAT 101323
|| |||||||| || || || || || ||||| || || | || | |||| || |
Sbjct 430 AAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCTAAGGTGCGACCATCCTCAAGC 371
Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383
||||| || || || || | |||||| ||||| || || |||||||| || || || ||
Sbjct 370 TGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATC 311
Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443
|| ||||| | || | |||||||| | ||||| ||||| |||| || || ||
Sbjct 310 TTGGCCTTTACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGTGTGATGGTCTTACCA 251
Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || || || |||||||||||
Sbjct 250 GTCAAGGTCTTCACGAATATCTGCAT 225
>seq964
Length=27231
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| || | | ||| | ||| || || || || || || ||||||||||||||
Sbjct 9719 CCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCC 9660
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| || | || ||||| || || || | | ||| || || || |||
Sbjct 9659 AAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGA 9600
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| || || || || || || || | || | || || || | || |||
Sbjct 9599 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCGGAGCTCTCGACT 9540
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||||| || |||||||| | |||||| || || || |||||
Sbjct 9539 TCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCAT 9493
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| || || | |||||||| || || || || ||||||||||| || | || | |
Sbjct 10392 ACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCAAGCGTACGACC 10333
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || | || || || || || || | | ||| || || || || || ||||| ||
Sbjct 10332 ATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATCCCTTCCTT 10273
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| ||||| || || || | || | |||||||| | ||||| || | |||||
Sbjct 10272 GTCCTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCCACCTCCAAAGTGAT 10213
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|||||||| || | || || ||||| |||||||||
Sbjct 10212 GGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCATG 10176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395965767549324
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