Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1703 113 3e-20 seq24793 105 5e-18 seq12662 105 5e-18 seq964 105 5e-18 seq11485 98.7 8e-16 seq7912 82.4 6e-11 >seq1703 Length=21771 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| ||||| ||||| || ||||| ||||| || || ||||| |||| Sbjct 18367 GCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGC 18426 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGG 48657 ||| | | | || ||||||||||| |||||||| |||| | ||| || || |||| Sbjct 18427 AAGAGTCCTCCCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGG 18486 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 || | || ||||| || |||||| || ||| | | || || || ||||| Sbjct 18487 GATC-CCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCCA 18545 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| ||||| || ||||| |||||||| || ||||| |||||||| Sbjct 18546 CCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 18594 >seq24793 Length=2311 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||||| ||| | | |||| || | |||||| ||||| || Sbjct 1650 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1709 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| ||||||| ||||| |||||||||||| |||||| ||| || Sbjct 1710 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACGTT 1769 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | ||||| |||||||| | || || || |||||||| | ||| || || Sbjct 1770 GTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAAC 1829 Query 48755 AAAAATCTGCATC 48767 ||||||||||||| Sbjct 1830 AAAAATCTGCATC 1842 >seq12662 Length=5898 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||||| ||| | | |||| || | |||||| ||||| || Sbjct 3452 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 3393 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| ||||||| ||||| |||||||||||| |||||| ||| || Sbjct 3392 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACGTT 3333 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | ||||| |||||||| | || || || |||||||| | ||| || || Sbjct 3332 GTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAAC 3273 Query 48755 AAAAATCTGCATC 48767 ||||||||||||| Sbjct 3272 AAAAATCTGCATC 3260 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| |||| ||| ||| |||| || | |||||| || || || Sbjct 3680 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCTTCAAGCTGCTTGCCTGCGAA 3621 Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 |||| | ||| || |||| ||||| | ||||||||||| |||||| ||| || Sbjct 3620 GATCAACCTCTGCTGGTCCGGTGGGATC-CCCTCCTTGTCTTGGATCTTTGCTTTGACGT 3562 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | || || ||||||||| | |||||||| ||||||||||| || || | Sbjct 3561 TGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTTTCCCGTCAAGGTCTTAA 3502 Query 48754 CAAAAATCTGCAT 48766 | || |||||||| Sbjct 3501 CGAAGATCTGCAT 3489 >seq964 Length=27231 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | || ||||| ||| || || || ||||| |||| || | ||| Sbjct 9938 AGACGCAAGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGA 9879 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||| ||||| || || | ||| ||||||| || | ||||||| Sbjct 9878 CCATCCTCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCC 9819 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || ||| ||||||| || Sbjct 9818 TTGTCCTGGATCTTCGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGAGTG 9759 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||||||| || || || |||||||| Sbjct 9758 ATGGTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 9721 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | ||| | ||| ||||| |||||| ||||| ||||| |||| Sbjct 10176 GCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAGC 10117 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| ||||||||||||||| || || | ||| || |||| || Sbjct 10116 TAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTGG 10057 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||| || || ||||| || || | | | ||||| ||| || Sbjct 10056 GATACCCTCTTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAAC 9997 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| || || | || || ||||| || ||||| Sbjct 9996 CTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || ||| || || ||||||||||| | || | ||| Sbjct 10394 AGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCAAGCGTACGA 10335 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTC 48667 | || || | ||| || || || || || |||| ||| || ||| |||||| | || || Sbjct 10334 CCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATC-CCTTC 10276 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || || | | | | || || ||||||||||| || Sbjct 10275 CTTGTCCTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCCACCTCCAAAGT 10216 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || |||||||||||||| Sbjct 10215 GATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 10177 >seq11485 Length=6519 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| ||||| ||| || |||||||||||||| | || | || | || || | ||| Sbjct 4909 ATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCGTCCATCCTCAAGCTG 4850 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||| || || || |||| ||| || |||| |||| || |||||||| ||||| Sbjct 4849 TTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTT 4790 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | ||| ||| | | || || || ||| ||||||| || || || || || || Sbjct 4789 TGCTTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCTGT 4730 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || |||||||||||||| Sbjct 4729 CAAAGTCTTGACAAAAATCTGCAT 4706 >seq7912 Length=9007 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || ||| ||| ||||| |||||||| || | || | ||| Sbjct 6117 AGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCTAAGGTGCGA 6176 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || || || ||||| || |||| || | || ||| Sbjct 6177 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCC 6236 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || || ||||||||||| ||| Sbjct 6237 TTATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCACCTCCAACGTG 6296 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 6297 ATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 6334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380637070232436