Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1703 113 3e-20
seq24793 105 5e-18
seq12662 105 5e-18
seq964 105 5e-18
seq11485 98.7 8e-16
seq7912 82.4 6e-11
>seq1703
Length=21771
Score = 113 bits (124), Expect = 3e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| || | ||| ||||| ||||| || ||||| ||||| || || ||||| ||||
Sbjct 18367 GCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGC 18426
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGG 48657
||| | | | || ||||||||||| |||||||| |||| | ||| || || ||||
Sbjct 18427 AAGAGTCCTCCCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGG 18486
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
|| | || ||||| || |||||| || ||| | | || || || |||||
Sbjct 18487 GATC-CCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCCA 18545
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| ||||| || ||||| |||||||| || ||||| ||||||||
Sbjct 18546 CCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 18594
>seq24793
Length=2311
Score = 105 bits (116), Expect = 5e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || |||||||||| ||| | | |||| || | |||||| ||||| ||
Sbjct 1650 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1709
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || | ||| ||||||| ||||| |||||||||||| |||||| ||| ||
Sbjct 1710 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACGTT 1769
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | ||||| |||||||| | || || || |||||||| | ||| || ||
Sbjct 1770 GTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAAC 1829
Query 48755 AAAAATCTGCATC 48767
|||||||||||||
Sbjct 1830 AAAAATCTGCATC 1842
>seq12662
Length=5898
Score = 105 bits (116), Expect = 5e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || |||||||||| ||| | | |||| || | |||||| ||||| ||
Sbjct 3452 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 3393
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || | ||| ||||||| ||||| |||||||||||| |||||| ||| ||
Sbjct 3392 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACGTT 3333
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | ||||| |||||||| | || || || |||||||| | ||| || ||
Sbjct 3332 GTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAAC 3273
Query 48755 AAAAATCTGCATC 48767
|||||||||||||
Sbjct 3272 AAAAATCTGCATC 3260
Score = 89.7 bits (98), Expect = 4e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || ||||| |||| ||| ||| |||| || | |||||| || || ||
Sbjct 3680 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCTTCAAGCTGCTTGCCTGCGAA 3621
Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693
|||| | ||| || |||| ||||| | ||||||||||| |||||| ||| ||
Sbjct 3620 GATCAACCTCTGCTGGTCCGGTGGGATC-CCCTCCTTGTCTTGGATCTTTGCTTTGACGT 3562
Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753
| | | || || ||||||||| | |||||||| ||||||||||| || || |
Sbjct 3561 TGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTTTCCCGTCAAGGTCTTAA 3502
Query 48754 CAAAAATCTGCAT 48766
| || ||||||||
Sbjct 3501 CGAAGATCTGCAT 3489
>seq964
Length=27231
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| || | || ||||| ||| || || || ||||| |||| || | |||
Sbjct 9938 AGACGCAAGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGA 9879
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| ||||||||| ||||| || || | ||| ||||||| || | |||||||
Sbjct 9878 CCATCCTCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCC 9819
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | || || || ||| ||||||| ||
Sbjct 9818 TTGTCCTGGATCTTCGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGAGTG 9759
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || |||||||||||||| || || || ||||||||
Sbjct 9758 ATGGTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 9721
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| || || || || | ||| | ||| ||||| |||||| ||||| ||||| ||||
Sbjct 10176 GCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAGC 10117
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||| ||||||||||||||| || || | ||| || |||| ||
Sbjct 10116 TAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTGG 10057
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| ||||| || || ||||| || || | | | ||||| ||| ||
Sbjct 10056 GATACCCTCTTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAAC 9997
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || ||||| || || | || || ||||| || |||||
Sbjct 9996 CTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949
Score = 82.4 bits (90), Expect = 6e-11
Identities = 151/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||| | || || || ||| || || ||||||||||| | || | |||
Sbjct 10394 AGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCAAGCGTACGA 10335
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTC 48667
| || || | ||| || || || || || |||| ||| || ||| |||||| | || ||
Sbjct 10334 CCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATC-CCTTC 10276
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
|||||| |||||| || || | | | | || || ||||||||||| ||
Sbjct 10275 CTTGTCCTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCCACCTCCAAAGT 10216
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || || | || || ||||||||||||||
Sbjct 10215 GATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 10177
>seq11485
Length=6519
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| ||||| ||| || |||||||||||||| | || | || | || || | |||
Sbjct 4909 ATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCGTCCATCCTCAAGCTG 4850
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
||||| || || || |||| ||| || |||| |||| || |||||||| |||||
Sbjct 4849 TTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTT 4790
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
| ||| ||| | | || || || ||| ||||||| || || || || || ||
Sbjct 4789 TGCTTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCTGT 4730
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
|||||| || ||||||||||||||
Sbjct 4729 CAAAGTCTTGACAAAAATCTGCAT 4706
>seq7912
Length=9007
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || ||| ||| ||||| |||||||| || | || | |||
Sbjct 6117 AGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCTAAGGTGCGA 6176
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| || || || || || ||||| || |||| || | || |||
Sbjct 6177 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCC 6236
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||||| || ||| | | | || || ||||||||||| |||
Sbjct 6237 TTATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCACCTCCAACGTG 6296
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | || || ||||| ||||||||
Sbjct 6297 ATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 6334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380637070232436
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