Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 417 9e-112
seq18917 194 2e-44
seq293 107 2e-18
>seq43812
Length=736
Score = 417 bits (462), Expect = 9e-112
Identities = 440/578 (76%), Gaps = 6/578 (1%)
Strand=Plus/Plus
Query 162917 CTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTA 162976
|||| |||||| |||| || | |||||||| ||| ||||| | |||||||| || |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 162977 TTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACC 163036
| ||||||||||| |||| ||| | || ||||| || ||||||||||| || |||||||
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 163037 CCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACG 163096
| || || ||| | || || || ||||||||||| || || || |||||||||||||| |
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 163097 GTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACG 163156
||||| | || |||||| | | ||||| ||||| || || | || || || | |
Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240
Query 163157 GTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTG 163216
| || | ||||| ||||||||||| |||||||||||||| |||||||| || || ||||
Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300
Query 163217 GTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTG 163276
| || ||||||||||| ||||| ||||||||| || ||||| | || |||||| | |
Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360
Query 163277 CTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCA 163336
| || | || || || | || ||||| ||||| | ||| | |||||||| ||||
Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420
Query 163337 ACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTC 163393
|||| || |||||||| ||||||||||| || ||||| ||| || || |||
Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTATTA 477
Query 163394 CTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTA 163453
||||||||| ||||| ||||| | || |||||||||||||||||||| || ||||
Sbjct 478 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 537
Query 163454 ATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491
|||||||||||||||| || ||||| ||||||| ||||
Sbjct 538 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 575
>seq18917
Length=3610
Score = 194 bits (214), Expect = 2e-44
Identities = 271/377 (72%), Gaps = 15/377 (4%)
Strand=Plus/Plus
Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATC 162597
|| ||||| ||||| |||||||| ||| ||| | | ||| |||| | || ||
Sbjct 3235 GGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA---ACTTCCGTTTTTATT 3291
Query 162598 ATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGT 162657
|| ||||||||||| || |||||||| ||||| |||||||| | ||||||||| | ||
Sbjct 3292 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 3351
Query 162658 TCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATT 162717
|| ||||| || || ||||| || || || ||||| | |||||| ||| ||||||
Sbjct 3352 TCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 3411
Query 162718 GGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGT 162777
||| | || || ||||| ||||||||||| ||| | ||||||| ||| | || || |||
Sbjct 3412 GGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 3471
Query 162778 GGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGT 162834
|| |||| |||| | || | ||||| | | || | ||| | | | |||
Sbjct 3472 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGT 3528
Query 162835 CGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCT 162894
||| ||||||||||| || ||| | ||||||||||||||||| ||||||||| ||
Sbjct 3529 CGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 3588
Query 162895 GCACCAGTATCTGCAGC 162911
|| || || ||||||
Sbjct 3589 GCTCCTGT---TGCAGC 3602
>seq293
Length=39549
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 162546 GTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATT 162605
||| ||||| |||||||||| | ||| | | | || || || || || |||||
Sbjct 25955 GTTTGGTGTTTTGATGATCCTTATCTTATTGACCGTAGTTTCTGTTTTTATTATCGCATT 26014
Query 162606 CATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCT 162665
|||||| || ||| ||| ||||| | |||||| | |||||| || | | | |||||
Sbjct 26015 CATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAACCTATTTCTCGATATCTTCT 26074
Query 162666 CTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCA 162725
||||| ||| | || || || ||||| | ||| || ||| | ||||||||| | ||
Sbjct 26075 TTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTACAGCTATTGGTTTGCA 26134
Query 162726 CTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAAT 162774
|| ||| | ||||||||||| ||| | ||| ||| ||| | || |||
Sbjct 26135 TTTTTATTCAATCTGGGAAGCTGCATTTGTTGGTGAATGGCTATACAAT 26183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552637271434080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |