Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq43812 417 9e-112 seq18917 194 2e-44 seq293 107 2e-18 >seq43812 Length=736 Score = 417 bits (462), Expect = 9e-112 Identities = 440/578 (76%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 162917 CTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTA 162976 |||| |||||| |||| || | |||||||| ||| ||||| | |||||||| || | Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60 Query 162977 TTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACC 163036 | ||||||||||| |||| ||| | || ||||| || ||||||||||| || ||||||| Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120 Query 163037 CCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACG 163096 | || || ||| | || || || ||||||||||| || || || |||||||||||||| | Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180 Query 163097 GTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACG 163156 ||||| | || |||||| | | ||||| ||||| || || | || || || | | Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240 Query 163157 GTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTG 163216 | || | ||||| ||||||||||| |||||||||||||| |||||||| || || |||| Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300 Query 163217 GTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTG 163276 | || ||||||||||| ||||| ||||||||| || ||||| | || |||||| | | Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360 Query 163277 CTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCA 163336 | || | || || || | || ||||| ||||| | ||| | |||||||| |||| Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420 Query 163337 ACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTC 163393 |||| || |||||||| ||||||||||| || ||||| ||| || || ||| Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTATTA 477 Query 163394 CTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTA 163453 ||||||||| ||||| ||||| | || |||||||||||||||||||| || |||| Sbjct 478 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 537 Query 163454 ATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 |||||||||||||||| || ||||| ||||||| |||| Sbjct 538 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 575 >seq18917 Length=3610 Score = 194 bits (214), Expect = 2e-44 Identities = 271/377 (72%), Gaps = 15/377 (4%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATC 162597 || ||||| ||||| |||||||| ||| ||| | | ||| |||| | || || Sbjct 3235 GGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA---ACTTCCGTTTTTATT 3291 Query 162598 ATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGT 162657 || ||||||||||| || |||||||| ||||| |||||||| | ||||||||| | || Sbjct 3292 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 3351 Query 162658 TCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATT 162717 || ||||| || || ||||| || || || ||||| | |||||| ||| |||||| Sbjct 3352 TCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 3411 Query 162718 GGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGT 162777 ||| | || || ||||| ||||||||||| ||| | ||||||| ||| | || || ||| Sbjct 3412 GGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 3471 Query 162778 GGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGT 162834 || |||| |||| | || | ||||| | | || | ||| | | | ||| Sbjct 3472 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGT 3528 Query 162835 CGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCT 162894 ||| ||||||||||| || ||| | ||||||||||||||||| ||||||||| || Sbjct 3529 CGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 3588 Query 162895 GCACCAGTATCTGCAGC 162911 || || || |||||| Sbjct 3589 GCTCCTGT---TGCAGC 3602 >seq293 Length=39549 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 162546 GTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATT 162605 ||| ||||| |||||||||| | ||| | | | || || || || || ||||| Sbjct 25955 GTTTGGTGTTTTGATGATCCTTATCTTATTGACCGTAGTTTCTGTTTTTATTATCGCATT 26014 Query 162606 CATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCT 162665 |||||| || ||| ||| ||||| | |||||| | |||||| || | | | ||||| Sbjct 26015 CATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAACCTATTTCTCGATATCTTCT 26074 Query 162666 CTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCA 162725 ||||| ||| | || || || ||||| | ||| || ||| | ||||||||| | || Sbjct 26075 TTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTACAGCTATTGGTTTGCA 26134 Query 162726 CTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAAT 162774 || ||| | ||||||||||| ||| | ||| ||| ||| | || ||| Sbjct 26135 TTTTTATTCAATCTGGGAAGCTGCATTTGTTGGTGAATGGCTATACAAT 26183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552637271434080