Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq6139 502 3e-137 seq43812 352 3e-92 seq18917 208 9e-49 seq12239 150 2e-31 >seq6139 Length=10899 Score = 502 bits (556), Expect = 3e-137 Identities = 717/1007 (71%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || ||||| |||||||| || |||||||| || | || || Sbjct 5088 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 5147 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 5148 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5207 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || || ||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 5208 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 5267 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || |||||| || | | | |||||| | | |||| ||||||||||| | || Sbjct 5268 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 5327 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918 || |||| || ||||| ||| | || || || ||| ||| || |||||||||||| Sbjct 5328 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGT 5387 Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTAT 164977 || ||||| |||| ||||| ||| | || || ||||| || || || ||| | | | Sbjct 5388 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 5446 Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 || ||||| ||||| || || ||||||||||| |||||||||||||| ||||| || Sbjct 5447 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 5506 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 || || ||||| ||||| || ||||||| || || || ||||| || || || || Sbjct 5507 AATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 5566 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 ||| ||||| | | || | ||||| || || || ||||| | ||||| || ||||| Sbjct 5567 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 5626 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 |||||| || || ||| | |||| | || || ||| ||||||||||| | || || Sbjct 5627 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGT 5686 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 |||||||| |||| || ||||| || |||||||| || || ||| | | || Sbjct 5687 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 5746 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || Sbjct 5747 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 5806 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | || Sbjct 5807 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 5866 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | | |||| || |||| | | ||||| ||| | ||||| ||||| || || || Sbjct 5867 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 5926 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 ||| ||||| ||| | ||||| |||||||| ||||||||||| ||||| || ||||| Sbjct 5927 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 5986 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 || || || || ||||| | || |||||| |||| || ||||| || |||||||| Sbjct 5987 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 6046 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 6047 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 6093 >seq43812 Length=736 Score = 352 bits (390), Expect = 3e-92 Identities = 423/575 (74%), Gaps = 0/575 (0%) Strand=Plus/Plus Query 163312 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATC 163371 || ||| || |||| || | |||||||| ||| ||||| | ||||| || || ||| Sbjct 3 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 62 Query 163372 TCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 163431 ||||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||||| Sbjct 63 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 122 Query 163432 TTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGC 163491 || || ||||| || || |||||||| ||||| || || || || || |||||||| Sbjct 123 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 182 Query 163492 AGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGT 163551 | | || || ||| | || | || || || |||| ||| || || | || Sbjct 183 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 242 Query 163552 TACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGT 163611 |||| || |||||||||||||| || |||||||| || || || || || || || || Sbjct 243 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 302 Query 163612 CGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCA 163671 || ||||||||||||||||| |||||||| | | | || |||||| | || Sbjct 303 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 362 Query 163672 GCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAAC 163731 || ||||| || || || || ||||||||||| | || | || || ||||| |||||| Sbjct 363 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 422 Query 163732 CTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACT 163791 || || |||||||| |||||||| || | ||||| |||| || ||||| | || ||| Sbjct 423 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 482 Query 163792 TGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCA 163851 ||||| || | ||||||| ||| || |||||||||||||||||||| ||||| || Sbjct 483 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 542 Query 163852 CACAACTTCCCACTCGATCTTGCTGCTGCTGAGTC 163886 ||||||||||| || || || ||||||| |||||| Sbjct 543 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577 >seq18917 Length=3610 Score = 208 bits (230), Expect = 9e-49 Identities = 294/413 (71%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 ||||| | ||| ||||| |||| | ||||| || || | || ||||| || || || Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 163011 |||||||| || | ||| | |||||| | ||| || |||| ||| | |||||||| Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312 Query 163012 CCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAAC 163071 || || || ||||| || || ||||| || || |||| || || | || || ||||| Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372 Query 163072 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 163131 || || || ||||| || |||| |||| || |||||| | || || ||||| ||| Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432 Query 163132 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTC 163191 |||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | || Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492 Query 163192 TTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCGC 163251 | ||||| | | || | | |||||||| ||||| ||||||||| | || Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552 Query 163252 TTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGC 163304 | |||||||| || ||||| ||| ||||| || || ||||||||||| || Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605 >seq12239 Length=6102 Score = 150 bits (166), Expect = 2e-31 Identities = 368/550 (67%), Gaps = 12/550 (2%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || ||||| |||||||| || |||||||| || | || || Sbjct 611 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 552 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 551 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 492 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGT-GCTAACTTTCTCACAGCAGCTGT 164797 || | ||||| | ||| || |||| | |||||| || |||| | || | || || Sbjct 491 TATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGT 433 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || |||||| || | | | |||||| | | |||| |||| || ||| | || Sbjct 432 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGTGGG-TCATGAAGCACA 374 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || |||| || ||||| ||| | || || ||| ||| || |||||||| | Sbjct 373 AGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAG 314 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCT---CATTG 164973 ||| ||||| |||| ||||| ||| | || || ||||| || || || ||| || | Sbjct 313 TGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATT 254 Query 164974 GTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCT 165033 || | ||||| ||||| || || ||||||||||| ||||||| |||| | | || Sbjct 253 GT----GACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCT 198 Query 165034 TCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAG 165093 | || || || || | ||||| || ||||||| || || || ||||| || || | Sbjct 197 TTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGG 139 Query 165094 CAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCC 165153 || ||| | ||| | | || | |||| || | || ||||| | |||| | | Sbjct 138 TTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGAACCATCTAC 79 Query 165154 ATATGATGGG 165163 |||||||||| Sbjct 78 ATATGATGGG 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562753878952160