Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12321 215 1e-50 seq549 208 1e-48 >seq12321 Length=6064 Score = 215 bits (238), Expect = 1e-50 Identities = 440/647 (68%), Gaps = 10/647 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||| || || | ||| ||| ||| ||||| ||| | | | Sbjct 1475 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCGCTCCTCCGGGAG 1416 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || || ||||| || |||||| || || | ||| | || ||||| Sbjct 1415 CTTCGTCCTCAATAA---GGTATAGATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTC 1359 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 | ||||||| ||||||||||| ||||||||||||| ||| | || |||||||| Sbjct 1358 TCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCA 1299 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || || || ||||| ||| || Sbjct 1298 GAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAGGCGACGAT 1239 Query 48280 CCTCTCTCCGAAAG-AAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| |||||| | | || ||| |||||| | ||||| | ||||||| Sbjct 1238 CCTCTCCGCGAAAGTCTGAGATC-CGTC---GATCCACTTCATGGCCCATTGGGCCTTCT 1183 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTG-CGTCC 48397 || || ||| || || ||||| |||||||||||||| | | | ||| | || ||| Sbjct 1182 TCGCGACGCAGGGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCTCTC-CTTGTTGTCT 1124 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | ||||| |||||| |||||||| ||||| | ||||| || |||||| Sbjct 1123 TTGATGTAGGTGTCGAGCAGGAGACTATACATCTCTGAGTGGATGTTCTCAATCGCGATC 1064 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||| ||||||||||| | ||||| | ||||| || || | ||| | Sbjct 1063 TGGAAGCCGTAGAAGGCACGCGCCTCGGAGACCTGGACGTCGGACATGAACCGGGAGGCG 1004 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 |||||||| ||| ||||| || || || || |||||||| ||||| ||||| | ||| Sbjct 1003 AGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAG 944 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 ||||||||| || | ||||| | |||| | || ||| | ||||| ||||| Sbjct 943 TGGCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGTGTGTCGCCGGAGAGGTCGACTTCC 884 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || | ||||||||||| || || || |||||||| |||| || Sbjct 883 TCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATCTCCCAGAT 837 >seq549 Length=32968 Score = 208 bits (230), Expect = 1e-48 Identities = 450/665 (68%), Gaps = 21/665 (3%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||| || || | ||| ||| | | ||||| ||| ||| | Sbjct 20427 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCTCACGCGCTCCTCCGAGAG 20368 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | ||| | || |||| || ||| || ||||| | ||| | ||||||||| Sbjct 20367 CTTCGTCCTAAGGAG---GGAGTAGATCAGGCACGCGAAGTCGCAGTGGAGGCCTTCGTC 20311 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 | ||| ||| ||||||||||| |||||| ||||||| ||| | || || ||||| Sbjct 20310 TCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCCACGCTTCTTCAGCCA 20251 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| ||| ||||||||||| || ||||| |||||||| || Sbjct 20250 GAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCAAGCGAACGCCACGAT 20191 Query 48280 CCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 |||||| |||| | | || |||||| | ||||| | ||||| || Sbjct 20190 CCTCTCGGCGAAGGCCTGAGGCCCATC---GATCCACTTCAAGGCCCATTGGGCCTTTTT 20134 Query 48340 CTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGC-GTCCG 48398 ||| | ||| || |||||||| || || |||||||| | | | ||| | || ||| Sbjct 20133 CTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTC-CTTGTTGTCTT 20075 Query 48399 CAACATAGGTAGT----GAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCG 48454 | || || || ||| || | ||||||||| ||||| | ||||| || ||| Sbjct 20074 TGATGTAAGT-GTCTAAGAGGAGACT---GTACATCTCGGAGTGGATGTTCTCGATCGCG 20019 Query 48455 ATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCC 48514 |||||||| ||||||||||| | |||||| | ||||| || || | ||| | Sbjct 20018 ATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGGACGTCGGACATGAAACGGGAG 19959 Query 48515 AGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGG 48574 |||||||| ||| ||||| || || || || |||||||| ||||| ||||| | | Sbjct 19958 GCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGACG 19899 Query 48575 AAATGGCGCTCGTTGTGGGTGAG----AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTC 48630 || || |||||| || | |||| || | |||| | | ||||| | ||||| Sbjct 19898 AAGTGTCGCTCGCCGTCGTTGAGGTTTTGC-TCCCAGTCGCGGGTGTCTTGGGAGAGGTC 19840 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGG 48690 ||||| || | ||||||||||| || ||||| |||||||| |||| || | ||| Sbjct 19839 GACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGATCTGCGG 19780 Query 48691 ATAGT 48695 |||| Sbjct 19779 GTAGT 19775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930779050234880