Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 215 1e-50
seq549 208 1e-48
>seq12321
Length=6064
Score = 215 bits (238), Expect = 1e-50
Identities = 440/647 (68%), Gaps = 10/647 (2%)
Strand=Plus/Minus
Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099
||||||| |||| |||| ||| || || | ||| ||| ||| ||||| ||| | | |
Sbjct 1475 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCGCTCCTCCGGGAG 1416
Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159
|| | | || || ||||| || |||||| || || | ||| | || |||||
Sbjct 1415 CTTCGTCCTCAATAA---GGTATAGATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTC 1359
Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219
| ||||||| ||||||||||| ||||||||||||| ||| | || ||||||||
Sbjct 1358 TCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCA 1299
Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279
||| || | ||| || ||||||||||| || || || ||||| ||| ||
Sbjct 1298 GAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAGGCGACGAT 1239
Query 48280 CCTCTCTCCGAAAG-AAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338
|||||| |||||| | | || ||| |||||| | ||||| | |||||||
Sbjct 1238 CCTCTCCGCGAAAGTCTGAGATC-CGTC---GATCCACTTCATGGCCCATTGGGCCTTCT 1183
Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTG-CGTCC 48397
|| || ||| || || ||||| |||||||||||||| | | | ||| | || |||
Sbjct 1182 TCGCGACGCAGGGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCTCTC-CTTGTTGTCT 1124
Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457
| ||||| |||||| |||||||| ||||| | ||||| || ||||||
Sbjct 1123 TTGATGTAGGTGTCGAGCAGGAGACTATACATCTCTGAGTGGATGTTCTCAATCGCGATC 1064
Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517
||||| ||||||||||| | ||||| | ||||| || || | ||| |
Sbjct 1063 TGGAAGCCGTAGAAGGCACGCGCCTCGGAGACCTGGACGTCGGACATGAACCGGGAGGCG 1004
Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577
|||||||| ||| ||||| || || || || |||||||| ||||| ||||| | |||
Sbjct 1003 AGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAG 944
Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637
||||||||| || | ||||| | |||| | || ||| | ||||| |||||
Sbjct 943 TGGCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGTGTGTCGCCGGAGAGGTCGACTTCC 884
Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684
|| | ||||||||||| || || || |||||||| |||| ||
Sbjct 883 TCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATCTCCCAGAT 837
>seq549
Length=32968
Score = 208 bits (230), Expect = 1e-48
Identities = 450/665 (68%), Gaps = 21/665 (3%)
Strand=Plus/Minus
Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099
||||||| |||| |||| ||| || || | ||| ||| | | ||||| ||| ||| |
Sbjct 20427 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCTCACGCGCTCCTCCGAGAG 20368
Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159
|| | | ||| | || |||| || ||| || ||||| | ||| | |||||||||
Sbjct 20367 CTTCGTCCTAAGGAG---GGAGTAGATCAGGCACGCGAAGTCGCAGTGGAGGCCTTCGTC 20311
Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219
| ||| ||| ||||||||||| |||||| ||||||| ||| | || || |||||
Sbjct 20310 TCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCCACGCTTCTTCAGCCA 20251
Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279
||| || | ||| ||| ||||||||||| || ||||| |||||||| ||
Sbjct 20250 GAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCAAGCGAACGCCACGAT 20191
Query 48280 CCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339
|||||| |||| | | || |||||| | ||||| | ||||| ||
Sbjct 20190 CCTCTCGGCGAAGGCCTGAGGCCCATC---GATCCACTTCAAGGCCCATTGGGCCTTTTT 20134
Query 48340 CTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGC-GTCCG 48398
||| | ||| || |||||||| || || |||||||| | | | ||| | || |||
Sbjct 20133 CTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTC-CTTGTTGTCTT 20075
Query 48399 CAACATAGGTAGT----GAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCG 48454
| || || || ||| || | ||||||||| ||||| | ||||| || |||
Sbjct 20074 TGATGTAAGT-GTCTAAGAGGAGACT---GTACATCTCGGAGTGGATGTTCTCGATCGCG 20019
Query 48455 ATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCC 48514
|||||||| ||||||||||| | |||||| | ||||| || || | ||| |
Sbjct 20018 ATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGGACGTCGGACATGAAACGGGAG 19959
Query 48515 AGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGG 48574
|||||||| ||| ||||| || || || || |||||||| ||||| ||||| | |
Sbjct 19958 GCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGACG 19899
Query 48575 AAATGGCGCTCGTTGTGGGTGAG----AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTC 48630
|| || |||||| || | |||| || | |||| | | ||||| | |||||
Sbjct 19898 AAGTGTCGCTCGCCGTCGTTGAGGTTTTGC-TCCCAGTCGCGGGTGTCTTGGGAGAGGTC 19840
Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGG 48690
||||| || | ||||||||||| || ||||| |||||||| |||| || | |||
Sbjct 19839 GACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGATCTGCGG 19780
Query 48691 ATAGT 48695
||||
Sbjct 19779 GTAGT 19775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930779050234880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |