Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq12321 183 6e-41 seq549 131 3e-25 >seq12321 Length=6064 Score = 183 bits (202), Expect = 6e-41 Identities = 391/573 (68%), Gaps = 17/573 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| || ||| |||||||||||| || | || || Sbjct 837 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 896 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || |||| || |||| | ||| | | | ||||| || || |||| || Sbjct 897 TCCGGCGACACACGCGACTGGGAGAATCTCAACGACGGCGAGCGCCACTTCATCAAACAC 956 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || |||| ||||| || ||||| || || || || ||||||||| | | ||| Sbjct 957 GTCCTGGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGGTTC 1016 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCATCGA 25715 | || || ||| | ||||| ||| |||||||| |||||||| || || || Sbjct 1017 ATGTCCGACGTCCAGGTCTCCGAGGCGC-GTGCCTTCTACGGCTTCCAGATCGCGATTGA 1075 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGC 25772 || | ||||| ||| ||||| | || ||| | || ||||| | |||| | Sbjct 1076 GAACATCCACTCAGAGATGTAT---AGTCTCCTGCTCGACACCTACATCAAAGACAACAA 1132 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| || | || || | ||||||||| ||| ||| || || || |||||| | Sbjct 1133 GGAGAGGGACCACCTCTTCCGGGCCATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCA 1192 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||||||||||||||| || | | || || || | ||| || | || |||| Sbjct 1193 ATGGGCCATGAAGTGGATCGACGGATCTCAG----ACTTTCGCGGAGAGGATCGTCGCCT 1248 Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | || ||| || || || ||||| ||| ||| || ||| | |||||||||||||| Sbjct 1249 TCGCCTGC-GTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CGATCTTCTGGCTCAA 1306 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || ||| |||||| || ||| ||| ||||||||||||||| || |||||||| Sbjct 1307 GAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCGAGAGACGAGGG 1366 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 || ||| | ||||| ||||||||| |||| || Sbjct 1367 GCTTCACTGCGATTTCGCCTGCCTGATCTATAC 1399 >seq549 Length=32968 Score = 131 bits (144), Expect = 3e-25 Identities = 378/573 (66%), Gaps = 18/573 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| |||||||||||| || | || || Sbjct 19786 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 19845 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACG---AGCAGCATTTTCTCAA 25592 || | |||| || |||| | || | | ||| |||| ||| || || |||| Sbjct 19846 TCCCAAGACACCCGCGACTGGGA-GCAAAACCTCAACGACGGCGAGCGACACTTCGTCAA 19904 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || ||||||||| | | Sbjct 19905 ACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCG 19964 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || || ||| | |||||| |||||||| |||||||| || || Sbjct 19965 TTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCGAT 20024 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 ||| || | ||||| ||| |||| || || || | || ||||| | |||| Sbjct 20025 CGAGAACATCCACTCCGAGATGTA---CAGTCTCCTCTTAGACACTTACATCAAAGACAA 20081 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | ||||| || | || || | || |||||| || || || | |||| ||||| Sbjct 20082 CAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATCCCTTGCGTAAAGAAAAAGGC 20141 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAG-CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||| ||||||||||| | | || || || || |||| || | || | Sbjct 20142 CCAATGGGCCTTGAAGTGGATCGATGGGCCTCAGGCCTTCGC----CGAGAGGATCGTGG 20197 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 | || ||| ||||| || ||||| ||| || || ||| | ||||||||||| Sbjct 20198 CGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGCT-CGATCTTCTGGCTG 20256 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| || || ||| ||||||||||| ||| || ||||| Sbjct 20257 AAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGAA 20316 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || |||||| | || || || |||||| ||||| Sbjct 20317 GGCCTCCACTGCGACTTCGCGTGCCTGATCTAC 20349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928093225230080