Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 574 5e-159
seq43812 419 2e-112
seq18917 260 1e-64
seq12239 215 5e-51
seq8879 100 3e-16
seq49459 98.7 1e-15
seq293 82.4 8e-11
>seq6139
Length=10899
Score = 574 bits (636), Expect = 5e-159
Identities = 726/998 (73%), Gaps = 0/998 (0%)
Strand=Plus/Plus
Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874
||||| || | ||||||||| | | || ||||| |||||||| |||||||||||
Sbjct 5076 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 5135
Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934
||| | || ||||| ||| ||| | || | || || ||| | || || || || |||
Sbjct 5136 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 5195
Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994
|| || ||||| ||||| ||| | || ||| || | || ||| ||||| |
Sbjct 5196 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 5255
Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054
|| || || || || || |||||| || | | | |||||| | | |||| ||||||
Sbjct 5256 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 5315
Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114
||||| | || |||||||| || ||| || | || || || |||||||||||
Sbjct 5316 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 5375
Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174
|| |||||||| || ||||| ||||| || ||||||||||| || ||||| || || ||
Sbjct 5376 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 5435
Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234
| || | | |||||||| ||||| ||||| || ||||| || ||||||||||||||
Sbjct 5436 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 5495
Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294
||| || || || |||||||| || || || |||||||||||||||| ||||| ||
Sbjct 5496 TCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGT 5555
Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354
|| ||||| || || || ||| | ||||| |||| || |||||||||||||| | ||
Sbjct 5556 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 5615
Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414
|| || |||||||||||||| |||||| ||||||| | ||| || ||| || || ||
Sbjct 5616 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCAT 5675
Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474
|| | ||||||||||| || | | | ||||||| || ||||| || ||| |||
Sbjct 5676 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 5735
Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534
||| | ||||||| ||||| || ||||| ||||| || |||||||| || |||||
Sbjct 5736 TTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCA 5795
Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594
|| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||||
Sbjct 5796 CAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 5855
Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654
|| || | ||| | |||| | || ||||| | | ||||| ||| | || || |||
Sbjct 5856 CCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGT 5915
Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714
|| || || || || || || || ||| | || | |||||||| ||||||||||| |||
Sbjct 5916 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTC 5975
Query 10715 TATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAA 10774
||||| || ||||| ||| | ||||||||| |||| || |||||||| | || ||
Sbjct 5976 TATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAG 6035
Query 10775 CCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812
|| || |||| | || | ||||| || || ||||| ||
Sbjct 6036 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 6073
>seq43812
Length=736
Score = 419 bits (464), Expect = 2e-112
Identities = 439/577 (76%), Gaps = 0/577 (0%)
Strand=Plus/Plus
Query 8666 CTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTA 8725
|||| ||| | |||| || |||||||||| || ||||||||||||||||| || |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 8726 TCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACC 8785
|||| ||||| ||||||| |||| |||| |||||||||||||||||||| || |||||||
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 8786 CCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATG 8845
| || |||||| | ||||| |||||||| |||||||| || || ||| || |||||||
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 8846 GTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATG 8905
|||| | || |||||| || | | || ||||| |||| || ||| || | |
Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240
Query 8906 GCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTG 8965
| |||| |||||||||||||| ||||||||||||||||| || ||||| || || ||||
Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300
Query 8966 GTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCG 9025
| || ||||||||||||||||| ||| ||||||||| | || ||||||||| | |
Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360
Query 9026 CTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCA 9085
| || ||||| || || || || |||||||| || | || | || ||||||||||
Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420
Query 9086 ACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACA 9145
|||| ||||| ||||| |||||||| || | | || | |||||||| || | || |
Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480
Query 9146 CCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACG 9205
| ||||| || | ||||||| || || ||||||||||| ||||| ||| | || |
Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 540
Query 9206 CACACAACTTCCCGCTTGACCTTGCGGCTGCTGAGTC 9242
| ||||||||||| || ||||| || |||| ||||||
Sbjct 541 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 260 bits (288), Expect = 1e-64
Identities = 288/380 (76%), Gaps = 8/380 (2%)
Strand=Plus/Plus
Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGC---TTCAT 8345
|| |||||||| ||| | ||||| || ||| || ||| |||| || || | || ||
Sbjct 3235 GGATGGTTTGGTGTTTTGATGATTCCTACC-TTATTGACCGCAAC---TTCCGTTTTTAT 3290
Query 8346 TACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGG 8405
|| ||||||| ||||||||||||| || || || || || || || ||||| ||| ||||
Sbjct 3291 TATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGG 3350
Query 8406 ATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAAT 8465
|||||| | ||||| ||||| || || || ||||| || |||| | ||| || ||
Sbjct 3351 ATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTAT 3410
Query 8466 TGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGG 8525
||| | || || || || ||||||||||| || || ||||||| ||||| ||||||||
Sbjct 3411 TGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGG 3470
Query 8526 TGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCG 8585
||||||||| | || | ||| | ||||| | ||||| || | ||||||||||||
Sbjct 3471 TGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCG 3530
Query 8586 TGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGC 8645
||| ||||||||| || ||| || || |||||||||||||| ||||||||| || ||
Sbjct 3531 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 3590
Query 8646 TCCTGTTGCCGCTGCTTCTG 8665
||||||||| |||||| |||
Sbjct 3591 TCCTGTTGCAGCTGCTACTG 3610
>seq12239
Length=6102
Score = 215 bits (238), Expect = 5e-51
Identities = 384/558 (69%), Gaps = 2/558 (0%)
Strand=Plus/Minus
Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874
||||| || ||||||||||| | | || ||||| |||||||| |||||||||||
Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564
Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934
||| | || ||||| ||| ||| | || | || || ||| | || || || || |||
Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504
Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994
|| || ||||| | ||| ||| | || ||| || | || ||| | | | |
Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTTTA 444
Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054
|| | || || || || |||||| || | | | |||||| | | |||| |||| |
Sbjct 443 ACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGTGGG-T 385
Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114
| ||| | || |||||||| || ||| || | || || |||| ||||||
Sbjct 384 CATGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTT 325
Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174
| |||||| | || ||||| ||||| || ||||||||||| || ||||| || || ||
Sbjct 324 TCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 265
Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234
| || | | ||||||| ||||| ||||| || ||||| || ||||||| |||| |
Sbjct 264 TCTGTTCAATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATT 205
Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294
|| || || || ||||| | || || ||| ||||||||||||| || ||||| ||
Sbjct 204 CCTGCCTTTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGT 146
Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354
|| |||| || || || ||| | ||||| |||| | ||| |||||||||| | ||
Sbjct 145 GTAGCGGTTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGAAC 86
Query 10355 CCCTTCCATATGATGGGA 10372
| | ||||||||||||
Sbjct 85 CATCTACATATGATGGGA 68
>seq8879
Length=8198
Score = 100 bits (110), Expect = 3e-16
Identities = 122/164 (74%), Gaps = 3/164 (2%)
Strand=Plus/Minus
Query 10211 TCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGT 10270
|||| || |||||||||||||| || ||| || || |||||| | | || | | ||
Sbjct 6995 TCTGACCCAATTGCTGTTTTTGTTTGTCTTT--CTAATTTATCCATTATGTCAATGTGGT 6938
Query 10271 TGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAG 10330
||||| |||||||| ||||| || || | ||| || || || ||| ||||||| || |
Sbjct 6937 TGGTTATTTGCGCCTAGTTTTGGTGTAGTGGCTATATTTCGATTCATTCTCTTTTTCAAA 6878
Query 10331 GGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGT 10374
|| |||||||||||||| | || | | |||||||| |||||
Sbjct 6877 GG-TTTCATAATTGGACATTGAACCTAATTCATATGATAGGAGT 6835
>seq49459
Length=611
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760
|| ||||||||||||||||| || ||||| ||||| ||||||| |||| |||| ||||||
Sbjct 489 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 548
Query 8761 GCTGAGCACAACAT 8774
||||||||||||||
Sbjct 549 GCTGAGCACAACAT 562
>seq293
Length=39549
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 8295 GTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTC-ATTACCGCAT 8353
|||||| ||| | ||||||| | | || ||| | || | || || |||| |||||
Sbjct 25955 GTTTGGTGTTTTGATGATCCTTATC-TTATTGACCGTAGTTTCTGTTTTTATTATCGCAT 26013
Query 8354 TCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCA 8413
|| ||||||||||| || || || | || || | ||||| || || ||| |||
Sbjct 26014 TCATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAACCTATTTCTCGATATCTTC 26073
Query 8414 TGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCC 8473
| || || ||| | || || || ||||| || ||| | |||| || ||||| | |
Sbjct 26074 TTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTACAGCTATTGGTTTGC 26133
Query 8474 ACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAA 8522
| || || | ||||||||||| || | | ||| ||| ||||| |||||
Sbjct 26134 ATTTTTATTCAATCTGGGAAGCTGCATTTGTTGGTGAATGGCTATACAA 26182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516062090208000
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