Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq43812 307 3e-79 seq18917 241 4e-59 seq293 82.4 2e-11 >seq43812 Length=736 Score = 307 bits (340), Expect = 3e-79 Identities = 395/545 (72%), Gaps = 0/545 (0%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 566 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 507 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 506 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 447 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 446 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 387 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 386 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 327 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || || ||||| || ||||| || || || Sbjct 326 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 267 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 266 TTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 207 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | | || ||||||||| |||| | || |||||||| Sbjct 206 GATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 147 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 146 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 87 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 86 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 27 Query 18374 TCCAA 18378 |||| Sbjct 26 ACCAA 22 >seq18917 Length=3610 Score = 241 bits (266), Expect = 4e-59 Identities = 301/413 (73%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 |||||||| || || || ||||| |||||| |||||| || |||||||| || | || Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546 Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524 ||||||||||| | || ||||| ||| || | || | | |||||| | ||||| Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486 Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584 |||| ||| || || ||||| |||| ||| || || | || ||||||||||||||| || Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426 Query 18585 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTT 18644 || || || | ||| || || ||| | || | || || ||||| || || |||||| Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366 Query 18645 CCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCA 18704 || || || | | ||| || ||||| |||||||||||||| || || || ||||||||| Sbjct 3365 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 3306 Query 18705 GCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACC 18764 |||| ||||| || | ||| | | || |||||| || | | ||| ||||| | || Sbjct 3305 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACA 3246 Query 18765 CCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 |||||||| || | ||| || ||||| | ||||| || | ||||| ||| || Sbjct 3245 CCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193 >seq293 Length=39549 Score = 82.4 bits (90), Expect = 2e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18566 TGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGC 18625 ||||||||||||||||| || || || | ||| || || |||| | | | || || Sbjct 26159 TGCAGCTTCCCAGATTGAATAAAAATGCAAACCAATAGCTGTAGAAGTATGAATAATGGC 26100 Query 18626 CCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATC 18685 ||||| || || | ||||||||| || | || || | ||| |||| ||||||| | Sbjct 26099 ACCTGAAATAATATCGTTTCCATAAAGAAGATATCGAGAAATAGGTTCACAAATACCACC 26040 Query 18686 TATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAG 18745 || || || ||||||||||| ||||| || | ||| | | | || |||| || | Sbjct 26039 AATATCTACTAAAGGAGCAGCAATGAATGCGATAATAAAAACAGAAACTACGGTCAATAA 25980 Query 18746 TGCAGGGATCATAAGTACCCCAAAC 18770 | ||||||| | || |||||| Sbjct 25979 GATAAGGATCATCAAAACACCAAAC 25955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151202082680808