Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 307 3e-79
seq18917 241 4e-59
seq293 82.4 2e-11
>seq43812
Length=736
Score = 307 bits (340), Expect = 3e-79
Identities = 395/545 (72%), Gaps = 0/545 (0%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||||||
Sbjct 566 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 507
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
||| | ||| | | |||||||| ||| | || ||||| | | || | ||
Sbjct 506 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 447
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
||||||||| ||||| ||||| || || ||||||||||| || || | || ||||
Sbjct 446 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 387
Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073
||| || | || |||||||| || ||||||||||||| | | |||||| ||
Sbjct 386 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 327
Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133
|||||||| |||||||| | || ||||| || || ||||| || ||||| || || ||
Sbjct 326 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 267
Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193
||||||||||| || ||| | || || | || ||| ||| || || ||||| ||
Sbjct 266 TTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 207
Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253
|| | ||||| || | | || ||||||||| |||| | || ||||||||
Sbjct 206 GATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 147
Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313
|| || ||||| | ||| || || || |||||||| || ||||| || || ||||||||
Sbjct 146 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 87
Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373
| ||| || ||||||||||| || || ||||||||||||||||| ||||| |||||
Sbjct 86 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 27
Query 18374 TCCAA 18378
||||
Sbjct 26 ACCAA 22
>seq18917
Length=3610
Score = 241 bits (266), Expect = 4e-59
Identities = 301/413 (73%), Gaps = 0/413 (0%)
Strand=Plus/Minus
Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464
|||||||| || || || ||||| |||||| |||||| || |||||||| || | ||
Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546
Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524
||||||||||| | || ||||| ||| || | || | | |||||| | |||||
Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486
Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584
|||| ||| || || ||||| |||| ||| || || | || ||||||||||||||| ||
Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426
Query 18585 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTT 18644
|| || || | ||| || || ||| | || | || || ||||| || || ||||||
Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366
Query 18645 CCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCA 18704
|| || || | | ||| || ||||| |||||||||||||| || || || |||||||||
Sbjct 3365 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 3306
Query 18705 GCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACC 18764
|||| ||||| || | ||| | | || |||||| || | | ||| ||||| | ||
Sbjct 3305 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACA 3246
Query 18765 CCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817
|||||||| || | ||| || ||||| | ||||| || | ||||| ||| ||
Sbjct 3245 CCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193
>seq293
Length=39549
Score = 82.4 bits (90), Expect = 2e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 18566 TGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGC 18625
||||||||||||||||| || || || | ||| || || |||| | | | || ||
Sbjct 26159 TGCAGCTTCCCAGATTGAATAAAAATGCAAACCAATAGCTGTAGAAGTATGAATAATGGC 26100
Query 18626 CCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATC 18685
||||| || || | ||||||||| || | || || | ||| |||| ||||||| |
Sbjct 26099 ACCTGAAATAATATCGTTTCCATAAAGAAGATATCGAGAAATAGGTTCACAAATACCACC 26040
Query 18686 TATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAG 18745
|| || || ||||||||||| ||||| || | ||| | | | || |||| || |
Sbjct 26039 AATATCTACTAAAGGAGCAGCAATGAATGCGATAATAAAAACAGAAACTACGGTCAATAA 25980
Query 18746 TGCAGGGATCATAAGTACCCCAAAC 18770
| ||||||| | || ||||||
Sbjct 25979 GATAAGGATCATCAAAACACCAAAC 25955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151202082680808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |