Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq6139 567 9e-157 seq43812 329 4e-85 seq18917 212 8e-50 seq12239 199 5e-46 seq4821 86.0 8e-12 >seq6139 Length=10899 Score = 567 bits (628), Expect = 9e-157 Identities = 736/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 6088 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 6029 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| || || | |||||| || || || || || || || ||||| ||| Sbjct 6028 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 5969 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 5968 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 5909 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 5908 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTACAAAT 5849 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 5848 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 5789 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 5788 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 5729 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 5728 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 5669 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | | ||| || | ||||| | ||| || || ||||||||||| |||||||| | Sbjct 5668 GCGCATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTTCAAT 5609 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| || || |||||||| Sbjct 5608 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 5549 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || ||||| ||| |||||| Sbjct 5548 CTAGGCGCAAAGAACCAACCCGATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAA 5489 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | ||| Sbjct 5488 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 5429 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || | || || |||||||||||||| |||||| Sbjct 5428 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGAGAGCAACAAAA 5369 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 ||||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 5368 GCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 5309 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || || ||||| || | ||| Sbjct 5308 AGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAAA 5249 Query 102550 TTAGCACCTTCAAGGTA---ACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 || |||||| | || ||||| | | || || |||||||| ||||| |||| Sbjct 5248 TTGCAACCTTCTAAATAGGAACTAGCC---AATCCATGAGTATACCATGAAGTTACAAAG 5192 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || || || | ||| ||||| | |||| ||| ||| ||||| || | ||| ||| Sbjct 5191 GTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCA 5132 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||||| ||||| || ||||| || | | ||||||||||| || ||||| Sbjct 5131 GACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 5076 >seq43812 Length=736 Score = 329 bits (364), Expect = 4e-85 Identities = 415/577 (72%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221 |||||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||| Sbjct 578 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 519 Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281 |||||| || ||| ||||| | || || ||||| || || | ||||| || |||| Sbjct 518 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 459 Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||||| | || |||||||| ||||| || || |||||||| ||||| || |||| ||| Sbjct 458 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 399 Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401 | || || ||||| ||||| ||||| || | Sbjct 398 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 339 Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461 || |||||||| || |||||||||||||| || || || ||||| ||||| ||||| Sbjct 338 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 279 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 |||||||| || ||||| ||||| ||||| |||| || | || ||||||| |||| Sbjct 278 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTC 219 Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580 || || || | || | | | || | || ||| ||||| ||||||||||| || || | Sbjct 218 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAA-GAACCATGCATAGCACTAAATAGGG 160 Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640 | || ||||| || ||||| || || | |||||| || |||||||| |||||||| || | Sbjct 159 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 100 Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700 | || ||||| || | ||| ||||||| || || || || || | ||||||| |||| | Sbjct 99 CAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 40 Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATAC 103737 | || |||||||||| ||||||| |||||| || Sbjct 39 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAAC 3 >seq18917 Length=3610 Score = 212 bits (234), Expect = 8e-50 Identities = 281/388 (72%), Gaps = 4/388 (1%) Strand=Plus/Minus Query 103745 GCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAG 103804 ||||| ||||||||||| || ||||| ||| ||||| || ||||| ||||||||| | Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546 Query 103805 GACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACA 103864 | |||||||||||| |||||||| | | |||| | ||||| | || | Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486 Query 103865 AGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGA 103924 |||| ||||||||||||| || ||||| ||||||| ||||| |||||||| || ||| Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426 Query 103925 TAGAAGTGAAGACCAATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGT 103982 || || || | |||||| || || || || |||| || ||||| || || || |||| Sbjct 3425 TAAAAATGCAAACCAATAGC--TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGT 3368 Query 103983 TACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTG 104042 | ||||| | || || |||| || ||||||||||| || || ||||| || ||||| | Sbjct 3367 TTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG 3308 Query 104043 CTGCTACGAAAGCAACGATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCA 104102 | || | ||| || | || || | ||||| | ||| | || || ||||||| | Sbjct 3307 CAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAA 3248 Query 104103 CACCGAACCAACCAACATAGAGACGGTT 104130 |||| ||||| |||| || |||||||| Sbjct 3247 CACCAAACCATCCAATGTAAAGACGGTT 3220 >seq12239 Length=6102 Score = 199 bits (220), Expect = 5e-46 Identities = 385/562 (69%), Gaps = 12/562 (2%) Strand=Plus/Plus Query 102166 CCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAAT 102225 ||||||||||| | |||| | ||||| |||| || | || | ||||| | ||| Sbjct 69 CCCATCATATGTAGATGGTTCAATGTCCAATTATAAAACTCTTGGAAAAAGAGGATGAAC 128 Query 102226 CTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 102285 | |||||| | || |||||||| || ||||||||||||| || || || ||||| Sbjct 129 CGAAATATAACCGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGACCT-GAGGA 187 Query 102286 TAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTAC 102345 || || ||||| || | |||| |||| || || |||||||| || || ||||| || Sbjct 188 TAAATTAGAAAGGCAGGAATAAAACCAGCAATTGGACCAGAGAATGCGATTGCATTATAA 247 Query 102346 GGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCA 102405 || | | | || | | ||| | || |||||||| | ||| ||||| || | || Sbjct 248 GGTCACAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCG 307 Query 102406 AATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAA 102465 || |||| |||||||| |||||| |||| || || | ||| ||| | ||| ||| Sbjct 308 AAAGCACTGTGGAGAGAAACAAAAACCCACAGGCCGTTTAATTGACACCAAC-GACTAAA 366 Query 102466 -TCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGG 102524 |||||||| |||||| ||||| | |||| | | |||||| | | | | |||||| Sbjct 367 ATCTCCTTGTGCTTCATGACCC-ACAGTAATAACAAAGAATGCGCTAAACTATTAGCAGG 425 Query 102525 CGTTGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCC---- 102580 || || || ||| | || | | | | |||||| ||| |||| | |||| Sbjct 426 AGTAGAAACTGCATCGGTTAAAAGACTGCAACCTTC----TAAATAGAAACTAGCCAATC 481 Query 102581 CGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGAT 102640 | || ||||||| ||||| |||| || || || || | ||| ||||| | |||| || Sbjct 482 CATGAATATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAAT 541 Query 102641 AAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAA 102700 | ||| ||||| || | ||| ||||||||||| ||||| || ||||| || | | Sbjct 542 AGGCACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTA 601 Query 102701 TCCAGTCATCCAGGATGTCAAA 102722 ||||||||| | || ||||| Sbjct 602 ACCAGTCATCAATAATATCAAA 623 >seq4821 Length=12785 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| ||||| || || ||| | || || ||||| || ||| | | | || || ||| Sbjct 10995 ACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCAGCAATCTGGTCATCA 11054 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || || || || || || || |||| || || ||| ||||| ||||| | Sbjct 11055 TCGAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCGGCACAGCTC 11114 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 || || | ||||||||| || || ||||||| |||| |||||||| ||||||||||| Sbjct 11115 GAGCAAGAACCAGCACGGCAAGAGTAAGGCAAGTCAATTCCTGCTTCCTCAGCAGCGTCG 11174 Query 102992 AG 102993 || Sbjct 11175 AG 11176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633000992470560