Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 567 9e-157
seq43812 329 4e-85
seq18917 212 8e-50
seq12239 199 5e-46
seq4821 86.0 8e-12
>seq6139
Length=10899
Score = 567 bits (628), Expect = 9e-157
Identities = 736/1016 (72%), Gaps = 6/1016 (1%)
Strand=Plus/Minus
Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769
|||||||| || | ||| | ||||| ||||| |||| || ||||||||| || |||||
Sbjct 6088 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 6029
Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829
| |||| ||| || || | |||||| || || || || || || || ||||| |||
Sbjct 6028 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 5969
Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889
|| || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| |||
Sbjct 5968 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 5909
Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949
|| | ||| ||||| | | || | | ||| |||| | ||| | || || |||||
Sbjct 5908 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTACAAAT 5849
Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009
| |||||||||||| ||||| | ||||| ||| |||| ||||||||||| |||||
Sbjct 5848 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 5789
Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069
|| ||||| || || |||||||||||||| ||||| |||| || | | || || |
Sbjct 5788 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 5729
Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129
|| || ||||| ||||||||||||| | | ||| || || ||||| |||| || ||
Sbjct 5728 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 5669
Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189
|| | | ||| || | ||||| | ||| || || ||||||||||| |||||||| |
Sbjct 5668 GCGCATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTTCAAT 5609
Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249
||||| ||||| || || || | ||||| | ||||| |||||| || || ||||||||
Sbjct 5608 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 5549
Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309
|||||||||||||||| || || || || ||||| || ||||| ||| ||||||
Sbjct 5548 CTAGGCGCAAAGAACCAACCCGATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAA 5489
Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369
||||| || || |||||||| || || ||||| || || || | | || | | |||
Sbjct 5488 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 5429
Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429
| || |||||||| | ||| ||||| || | || || |||||||||||||| ||||||
Sbjct 5428 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGAGAGCAACAAAA 5369
Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489
||||| || || || | ||| ||| | ||||||||||| ||||||||||||||
Sbjct 5368 GCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 5309
Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549
|||| | | |||||| | | | | |||||| || || || ||||| || | |||
Sbjct 5308 AGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAAA 5249
Query 102550 TTAGCACCTTCAAGGTA---ACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606
|| |||||| | || ||||| | | || || |||||||| ||||| ||||
Sbjct 5248 TTGCAACCTTCTAAATAGGAACTAGCC---AATCCATGAGTATACCATGAAGTTACAAAG 5192
Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666
|| || || || | ||| ||||| | |||| ||| ||| ||||| || | ||| |||
Sbjct 5191 GTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCA 5132
Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722
|||||||| ||||| || ||||| || | | ||||||||||| || |||||
Sbjct 5131 GACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 5076
>seq43812
Length=736
Score = 329 bits (364), Expect = 4e-85
Identities = 415/577 (72%), Gaps = 2/577 (0%)
Strand=Plus/Minus
Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221
|||||| ||||||| ||||| || |||||||||||||| ||||| || ||||| |||||
Sbjct 578 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 519
Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281
|||||| || ||| ||||| | || || ||||| || || | ||||| || ||||
Sbjct 518 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 459
Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341
||||| | || |||||||| ||||| || || |||||||| ||||| || |||| |||
Sbjct 458 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 399
Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401
| || || ||||| ||||| ||||| || |
Sbjct 398 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 339
Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461
|| |||||||| || |||||||||||||| || || || ||||| ||||| |||||
Sbjct 338 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 279
Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521
|||||||| || ||||| ||||| ||||| |||| || | || ||||||| ||||
Sbjct 278 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTC 219
Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580
|| || || | || | | | || | || ||| ||||| ||||||||||| || || |
Sbjct 218 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAA-GAACCATGCATAGCACTAAATAGGG 160
Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640
| || ||||| || ||||| || || | |||||| || |||||||| |||||||| || |
Sbjct 159 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 100
Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700
| || ||||| || | ||| ||||||| || || || || || | ||||||| |||| |
Sbjct 99 CAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 40
Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATAC 103737
| || |||||||||| ||||||| |||||| ||
Sbjct 39 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAAC 3
>seq18917
Length=3610
Score = 212 bits (234), Expect = 8e-50
Identities = 281/388 (72%), Gaps = 4/388 (1%)
Strand=Plus/Minus
Query 103745 GCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAG 103804
||||| ||||||||||| || ||||| ||| ||||| || ||||| ||||||||| |
Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546
Query 103805 GACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACA 103864
| |||||||||||| |||||||| | | |||| | ||||| | || |
Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486
Query 103865 AGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGA 103924
|||| ||||||||||||| || ||||| ||||||| ||||| |||||||| || |||
Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426
Query 103925 TAGAAGTGAAGACCAATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGT 103982
|| || || | |||||| || || || || |||| || ||||| || || || ||||
Sbjct 3425 TAAAAATGCAAACCAATAGC--TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGT 3368
Query 103983 TACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTG 104042
| ||||| | || || |||| || ||||||||||| || || ||||| || ||||| |
Sbjct 3367 TTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG 3308
Query 104043 CTGCTACGAAAGCAACGATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCA 104102
| || | ||| || | || || | ||||| | ||| | || || ||||||| |
Sbjct 3307 CAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAA 3248
Query 104103 CACCGAACCAACCAACATAGAGACGGTT 104130
|||| ||||| |||| || ||||||||
Sbjct 3247 CACCAAACCATCCAATGTAAAGACGGTT 3220
>seq12239
Length=6102
Score = 199 bits (220), Expect = 5e-46
Identities = 385/562 (69%), Gaps = 12/562 (2%)
Strand=Plus/Plus
Query 102166 CCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAAT 102225
||||||||||| | |||| | ||||| |||| || | || | ||||| | |||
Sbjct 69 CCCATCATATGTAGATGGTTCAATGTCCAATTATAAAACTCTTGGAAAAAGAGGATGAAC 128
Query 102226 CTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 102285
| |||||| | || |||||||| || ||||||||||||| || || || |||||
Sbjct 129 CGAAATATAACCGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGACCT-GAGGA 187
Query 102286 TAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTAC 102345
|| || ||||| || | |||| |||| || || |||||||| || || ||||| ||
Sbjct 188 TAAATTAGAAAGGCAGGAATAAAACCAGCAATTGGACCAGAGAATGCGATTGCATTATAA 247
Query 102346 GGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCA 102405
|| | | | || | | ||| | || |||||||| | ||| ||||| || | ||
Sbjct 248 GGTCACAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCG 307
Query 102406 AATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAA 102465
|| |||| |||||||| |||||| |||| || || | ||| ||| | ||| |||
Sbjct 308 AAAGCACTGTGGAGAGAAACAAAAACCCACAGGCCGTTTAATTGACACCAAC-GACTAAA 366
Query 102466 -TCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGG 102524
|||||||| |||||| ||||| | |||| | | |||||| | | | | ||||||
Sbjct 367 ATCTCCTTGTGCTTCATGACCC-ACAGTAATAACAAAGAATGCGCTAAACTATTAGCAGG 425
Query 102525 CGTTGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCC---- 102580
|| || || ||| | || | | | | |||||| ||| |||| | ||||
Sbjct 426 AGTAGAAACTGCATCGGTTAAAAGACTGCAACCTTC----TAAATAGAAACTAGCCAATC 481
Query 102581 CGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGAT 102640
| || ||||||| ||||| |||| || || || || | ||| ||||| | |||| ||
Sbjct 482 CATGAATATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAAT 541
Query 102641 AAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAA 102700
| ||| ||||| || | ||| ||||||||||| ||||| || ||||| || | |
Sbjct 542 AGGCACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTA 601
Query 102701 TCCAGTCATCCAGGATGTCAAA 102722
||||||||| | || |||||
Sbjct 602 ACCAGTCATCAATAATATCAAA 623
>seq4821
Length=12785
Score = 86.0 bits (94), Expect = 8e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871
||||| ||||| || || ||| | || || ||||| || ||| | | | || || |||
Sbjct 10995 ACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCAGCAATCTGGTCATCA 11054
Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931
|| || || || || || || |||| || || ||| ||||| ||||| |
Sbjct 11055 TCGAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCGGCACAGCTC 11114
Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991
|| || | ||||||||| || || ||||||| |||| |||||||| |||||||||||
Sbjct 11115 GAGCAAGAACCAGCACGGCAAGAGTAAGGCAAGTCAATTCCTGCTTCCTCAGCAGCGTCG 11174
Query 102992 AG 102993
||
Sbjct 11175 AG 11176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633000992470560
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