Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 347 4e-91
seq18917 181 3e-41
>seq43812
Length=736
Score = 347 bits (384), Expect = 4e-91
Identities = 416/565 (74%), Gaps = 0/565 (0%)
Strand=Plus/Minus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || ||||||||||| || || || |||||||| || || | ||||||||
Sbjct 565 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 506
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||||| ||| |||||||| || || || || |||| | | | | | | |||
Sbjct 505 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 446
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||||||||| | |||||||||||| ||| | || | |||| ||||
Sbjct 445 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 386
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
||||||||||| || ||||| || || | |||||||| | | ||| ||||| || ||
Sbjct 385 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 326
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
||||||||||||||||| | || |||||||| ||||||||||| ||||| ||||||||
Sbjct 325 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 266
Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830
||||| |||||||| || |||| || | || || | | ||| || || || |
Sbjct 265 TCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 206
Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890
|| | || || |||| ||| ||||||||| || | || || |||||
Sbjct 205 ATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 146
Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950
|| || ||||| | ||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 145 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 86
Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010
| ||| ||||||| || || || || || | |||||| ||||||||||| || ||
Sbjct 85 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 26
Query 22011 CCAAACGGATAAACAAGGAACACAG 22035
|||| || || | | ||| ||||
Sbjct 25 CCAATTGGGTAGATCAAGAAAACAG 1
>seq18917
Length=3610
Score = 181 bits (200), Expect = 3e-41
Identities = 277/392 (71%), Gaps = 2/392 (1%)
Strand=Plus/Minus
Query 22036 CAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTC 22095
|||| ||||| || |||||||| || || |||||| ||||| || | ||| || || |
Sbjct 3610 CAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGAC 3551
Query 22096 GATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATA 22155
| | |||||||||||||| || ||||| ||| | || |||| | ||||| | |
Sbjct 3550 GGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAA 3491
Query 22156 CGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAA 22215
| | |||| | ||||| |||||||| ||||||||||||| | ||||||||||| |
Sbjct 3490 CAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGA 3431
Query 22216 TTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGT 22275
| || || || || | || || || | | |||| | ||| ||||| || || |
Sbjct 3430 TCGGATAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATAT 3371
Query 22276 TGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTG 22335
|||| || || | || || |||| || ||||| || || ||||| || || || || |
Sbjct 3370 TGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAG 3311
Query 22336 GTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATA 22394
| || ||| || |||||||||||| | || |||| ||| ||| | ||||||||
Sbjct 3310 GAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTA-GGAATCATC 3252
Query 22395 AGGACTCCGAACCATCCTACATAAAGACGGTT 22426
| || || |||||||| | |||||||||||
Sbjct 3251 AAAACACCAAACCATCCAATGTAAAGACGGTT 3220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146095611006960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |