Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq43812 347 4e-91 seq18917 181 3e-41 >seq43812 Length=736 Score = 347 bits (384), Expect = 4e-91 Identities = 416/565 (74%), Gaps = 0/565 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || |||||||| || || | |||||||| Sbjct 565 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 506 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| ||| |||||||| || || || || |||| | | | | | | ||| Sbjct 505 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 446 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| ||| | || | |||| |||| Sbjct 445 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 386 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||||||||| || ||||| || || | |||||||| | | ||| ||||| || || Sbjct 385 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 326 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| ||||||||||| ||||| |||||||| Sbjct 325 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 266 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||| |||||||| || |||| || | || || | | ||| || || || | Sbjct 265 TCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 206 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| ||| ||||||||| || | || || ||||| Sbjct 205 ATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 146 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| || ||||||||||| ||||||||||||||||| || Sbjct 145 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 86 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| ||||||| || || || || || | |||||| ||||||||||| || || Sbjct 85 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 26 Query 22011 CCAAACGGATAAACAAGGAACACAG 22035 |||| || || | | ||| |||| Sbjct 25 CCAATTGGGTAGATCAAGAAAACAG 1 >seq18917 Length=3610 Score = 181 bits (200), Expect = 3e-41 Identities = 277/392 (71%), Gaps = 2/392 (1%) Strand=Plus/Minus Query 22036 CAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTC 22095 |||| ||||| || |||||||| || || |||||| ||||| || | ||| || || | Sbjct 3610 CAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGAC 3551 Query 22096 GATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATA 22155 | | |||||||||||||| || ||||| ||| | || |||| | ||||| | | Sbjct 3550 GGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAA 3491 Query 22156 CGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAA 22215 | | |||| | ||||| |||||||| ||||||||||||| | ||||||||||| | Sbjct 3490 CAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGA 3431 Query 22216 TTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGT 22275 | || || || || | || || || | | |||| | ||| ||||| || || | Sbjct 3430 TCGGATAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATAT 3371 Query 22276 TGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTG 22335 |||| || || | || || |||| || ||||| || || ||||| || || || || | Sbjct 3370 TGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAG 3311 Query 22336 GTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATA 22394 | || ||| || |||||||||||| | || |||| ||| ||| | |||||||| Sbjct 3310 GAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTA-GGAATCATC 3252 Query 22395 AGGACTCCGAACCATCCTACATAAAGACGGTT 22426 | || || |||||||| | ||||||||||| Sbjct 3251 AAAACACCAAACCATCCAATGTAAAGACGGTT 3220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146095611006960