Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq27908 95.1 6e-15 >seq27908 Length=1802 Score = 95.1 bits (104), Expect = 6e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| ||||| || ||||| ||||| || || || | ||||| ||||||||||| || Sbjct 692 TACCCTTTCTCTTGCCTCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCA 751 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||||||||| | ||| |||| ||| || |||| | | || | ||| | | | Sbjct 752 GCATTGGAACAATACCATTTGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCAC 811 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 || | |||| | || ||| || || ||||| |||| |||| ||||||| ||| Sbjct 812 GGATGTTGTGAACCGAAACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTT 871 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | |||||| | ||||||| ||||||||| | ||||| Sbjct 872 TCAATGTATCATATATTCCTTCAATGCTATCATCCTTCAT 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252840371366900