Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq43812 390 1e-103 seq6139 376 3e-99 seq18917 167 3e-36 seq12239 140 4e-28 seq2063 107 2e-18 seq49459 84.2 3e-11 >seq43812 Length=736 Score = 390 bits (432), Expect = 1e-103 Identities = 435/581 (75%), Gaps = 0/581 (0%) Strand=Plus/Minus Query 124033 TGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAAC 124092 || ||||||| ||| ||||||||||| ||||||||||| ||||| | |||||||||||| Sbjct 581 TGGAGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 522 Query 124093 TTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTT 124152 ||||||||| | ||| || | ||| | || |||| |||| || | | ||| | Sbjct 521 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 462 Query 124153 AGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGAT 124212 | |||||| ||||||||||| || ||||||||||| | |||||| ||||| || | || Sbjct 461 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 402 Query 124213 ACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACT 124272 ||| | || || ||||| | || ||| || || || | |||| |||||| || | | Sbjct 401 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 342 Query 124273 TCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGC 124332 | || |||||||| |||||| |||||||| | || ||||| |||||||| || || Sbjct 341 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 282 Query 124333 TACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTG 124392 ||| |||||||| |||||||||||||| ||||| | || || | || || || | Sbjct 281 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATT 222 Query 124393 CTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAA 124452 ||||| ||||| ||||| | | ||| || || | |||||||||||| || |||| Sbjct 221 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 162 Query 124453 AGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATG 124512 || || ||||| | || ||||| ||| |||||| || || ||||| |||||||| || Sbjct 161 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 102 Query 124513 CTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATC 124572 ||| || ||||| || | |||||||||||||||||| ||||| || || ||||||||||| Sbjct 101 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 42 Query 124573 AGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAG 124613 ||| || || ||||||| |||||| | ||||| |||| Sbjct 41 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 1 >seq6139 Length=10899 Score = 376 bits (416), Expect = 3e-99 Identities = 706/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 6092 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 6033 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | |||||| || || |||||||| Sbjct 6032 ATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAA 5973 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 5972 AGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 5913 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | |||||||| || | || | || |||| | ||| | || || || Sbjct 5912 TAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTAC 5853 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || ||||| Sbjct 5852 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGA 5793 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 5792 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 5733 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 5732 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 5694 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || |||| | || | || |||| || || || Sbjct 5693 ATTTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCCGCGCCCAGTACACCAGCGAC 5634 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||||||| || || || ||||| | || | ||| | Sbjct 5633 TCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAA 5574 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| ||||||||||| Sbjct 5573 TCGAAATATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCCGATTGACCTAGTGG 5514 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || ||||||| | || || || || | |||||||||||| ||| || || Sbjct 5513 ATAAATTAGAAAGACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 5454 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | |||||||| | | ||| |||||||| | | | Sbjct 5453 AGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 5394 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | || || | || ||||| ||| ||||| || | ||| |||||||| || Sbjct 5393 GAAAGCACCGTGGAGAGCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAA 5334 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | ||| | | | | |||| Sbjct 5333 ATCTCCTTGTGCTTCAGGACCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGG 5274 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || ||||| || ||||| || || || || | ||| ||| || | ||||| Sbjct 5273 AGTAGAAACTGCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATG 5214 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| || Sbjct 5213 AGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGC 5154 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || || || || || ||| |||||| Sbjct 5153 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCA 5094 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 5093 GTCATCCATAATATCAAA 5076 >seq18917 Length=3610 Score = 167 bits (184), Expect = 3e-36 Identities = 287/414 (69%), Gaps = 2/414 (0%) Strand=Plus/Minus Query 124619 GCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTAT 124678 ||||| | || || |||||||| |||||| |||||||||||||| || | | | | Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546 Query 124679 GATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACC 124738 |||||||||| | ||||| || | | ||||| | ||||| | || | Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486 Query 124739 AACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGG 124798 | | |||||||||||| || || | |||||||||||| | ||| ||||||||||| || Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426 Query 124799 TAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTA 124858 || || || | || ||||| || | |||| || ||||| || || || ||||| Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366 Query 124859 CCATATAAGAA-AGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGC 124917 || || ||||| ||| || | || ||||| | || || || ||||| || ||||| || Sbjct 3365 CCGTA-AAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGC 3307 Query 124918 TGCAATAAATGCAACGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAAC 124977 ||||| ||||| | || ||| | | ||| || | |||| |||||||| | ||| Sbjct 3306 AGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAAC 3247 Query 124978 ACCAAACCAACCAACATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 ||||||||| |||| |||| | ||| | || |||| ||| | |||||| Sbjct 3246 ACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193 >seq12239 Length=6102 Score = 140 bits (154), Expect = 4e-28 Identities = 371/559 (66%), Gaps = 6/559 (1%) Strand=Plus/Plus Query 123347 CCCATCATGTGAA-ATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| || | |||| |||||||| || | || |||| | || | ||| | Sbjct 69 CCCATCATATGTAGATGG-TTCAATGTCCAATTATAAAACTCTTGGAAAAAGAGGATGAA 127 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || | || ||||| || ||||| |||||||||| |||||| | || Sbjct 128 CCGAAATATAACCGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGACCT-GAGG 186 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || |||||| | | || | || || | |||||||||||| ||| || || Sbjct 187 ATAAATTAGAAAGGCAGGAATAAAACCAGCAATTGGACCAGAGAATGCGATTGCATTATA 246 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | |||||||| | | ||| |||||||| | | | Sbjct 247 AGGTCACAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 306 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | | || | | ||||| ||| || || | ||| |||||||| || Sbjct 307 GAAAGCACTGTGGAGAGAAACAAAAACCCACAGGCCGTTTAATTGACACCAACGACTAAA 366 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||| | ||| | || || | | | ||| | | | | |||| Sbjct 367 ATCTCCTTGTGCTTCATGACCC-ACAGTAATAACAAAGAATGCGCTAAACTATTAGCAGG 425 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCT-CAAGATATGAAGATGCAATACCAT 123764 || || ||||| | ||||| ||| ||| ||| | | ||| || || | |||| Sbjct 426 AGTAGAAACTGCATCGGTTAA-AAGACTGCAACCTTCTAAATAGAAACTAGCCAATCCAT 484 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 | |||||||||| || || ||||| || ||| ||||||||| || | | | ||| | Sbjct 485 GAATATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGG 544 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 ||||||| | || || ||||||||||| |||| || || || || || ||| ||||| Sbjct 545 CACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACC 604 Query 123885 AGTCGTCAAGAACATCAAA 123903 |||| |||| || |||||| Sbjct 605 AGTCATCAATAATATCAAA 623 >seq2063 Length=19953 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 14/212 (7%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || ||||| || || ||||||||||| || ||||| | Sbjct 8224 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTATCCCTCCTAATATGCTGTTCCCTAGTCT 8283 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC-------CACTGACTGACCTACA 139427 | | || | || |||| || |||| | || ||||||| ||| | | Sbjct 8284 GCATAGCCA-----TACGCAGAGCTGGCTTCCCAGTAGAATCAACACTGAC--ACCAATA 8336 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 || || ||||| ||| |||||||||||| | | || || || || ||||| || ||| Sbjct 8337 ATCCTCCCAGGCATCATTCTCTTATACTCTCCCGAAGTAGCCAAAAACGCAGCGTGGGGA 8396 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 || ||||| ||||| |||| ||||||||| || Sbjct 8397 CCACCGTAACCCATCGGAACACCAAACCTCTG 8428 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | |||||| |||||||| ||||| | ||||| || ||||||||||| Sbjct 6443 AAATGGTGCTAAATGTTTCTTCACACCAATGGGACCCATTCCAGGCCCACCACCTCCATG 6502 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 6503 AGGAATACAGAAAGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 6551 >seq49459 Length=611 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 124505 ATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGC 124564 ||||| ||||| || ||||| || | |||||||||||||||||| ||||| || || ||| Sbjct 562 ATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC 503 Query 124565 ATACCATCAGAGAA 124578 ||||||||||| || Sbjct 502 ATACCATCAGAAAA 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578529903444640