Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 390 1e-103
seq6139 376 3e-99
seq18917 167 3e-36
seq12239 140 4e-28
seq2063 107 2e-18
seq49459 84.2 3e-11
>seq43812
Length=736
Score = 390 bits (432), Expect = 1e-103
Identities = 435/581 (75%), Gaps = 0/581 (0%)
Strand=Plus/Minus
Query 124033 TGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAAC 124092
|| ||||||| ||| ||||||||||| ||||||||||| ||||| | ||||||||||||
Sbjct 581 TGGAGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 522
Query 124093 TTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTT 124152
||||||||| | ||| || | ||| | || |||| |||| || | | ||| |
Sbjct 521 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 462
Query 124153 AGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGAT 124212
| |||||| ||||||||||| || ||||||||||| | |||||| ||||| || | ||
Sbjct 461 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 402
Query 124213 ACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACT 124272
||| | || || ||||| | || ||| || || || | |||| |||||| || | |
Sbjct 401 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 342
Query 124273 TCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGC 124332
| || |||||||| |||||| |||||||| | || ||||| |||||||| || ||
Sbjct 341 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 282
Query 124333 TACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTG 124392
||| |||||||| |||||||||||||| ||||| | || || | || || || |
Sbjct 281 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATT 222
Query 124393 CTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAA 124452
||||| ||||| ||||| | | ||| || || | |||||||||||| || ||||
Sbjct 221 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 162
Query 124453 AGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATG 124512
|| || ||||| | || ||||| ||| |||||| || || ||||| |||||||| ||
Sbjct 161 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 102
Query 124513 CTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATC 124572
||| || ||||| || | |||||||||||||||||| ||||| || || |||||||||||
Sbjct 101 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 42
Query 124573 AGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAG 124613
||| || || ||||||| |||||| | ||||| ||||
Sbjct 41 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 1
>seq6139
Length=10899
Score = 376 bits (416), Expect = 3e-99
Identities = 706/1038 (68%), Gaps = 21/1038 (2%)
Strand=Plus/Minus
Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925
|||||| ||||| || | ||||| || || || ||||||| || || ||||| || ||
Sbjct 6092 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 6033
Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985
|| || | |||||| || | || ||||| || | |||||| || || ||||||||
Sbjct 6032 ATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAA 5973
Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045
|||||| || || || ||||| ||||| | || || || || || ||||| || || |
Sbjct 5972 AGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 5913
Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105
||||| | |||||||| || | || | || |||| | ||| | || || ||
Sbjct 5912 TAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTAC 5853
Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165
|| ||||||| ||| ||||| | | ||| || ||||| || | ||||| || |||||
Sbjct 5852 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGA 5793
Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225
||| || | ||| || || | ||| |||||||||||| | || || || | || ||
Sbjct 5792 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 5733
Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285
| ||| |||| ||| | || ||| || ||||| | || ||
Sbjct 5732 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 5694
Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345
|| | || || ||||||||||| || |||| | || | || |||| || || ||
Sbjct 5693 ATTTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCCGCGCCCAGTACACCAGCGAC 5634
Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405
|||||||| |||||||| |||||||| || || || ||||| | || | ||| |
Sbjct 5633 TCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAA 5574
Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465
||||| || || || ||||| || || || |||||||||| |||||||||||
Sbjct 5573 TCGAAATATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCCGATTGACCTAGTGG 5514
Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525
||| || ||||||| | || || || || | |||||||||||| ||| || ||
Sbjct 5513 ATAAATTAGAAAGACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 5454
Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585
||||| | ||| || || | |||||||| | | ||| |||||||| | | |
Sbjct 5453 AGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 5394
Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645
|| | || || | || ||||| ||| ||||| || | ||| |||||||| ||
Sbjct 5393 GAAAGCACCGTGGAGAGCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAA 5334
Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705
||||||||||||||| ||||| || |||| | | ||| | | | | ||||
Sbjct 5333 ATCTCCTTGTGCTTCAGGACCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGG 5274
Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765
|| || ||||| || ||||| || || || || | ||| ||| || | |||||
Sbjct 5273 AGTAGAAACTGCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATG 5214
Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825
||||||||||| || || ||||| || ||| ||||||||| || | | | ||| ||
Sbjct 5213 AGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGC 5154
Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885
|||||| | || || ||||||||||| |||| || || || || || ||| ||||||
Sbjct 5153 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCA 5094
Query 123886 GTCGTCAAGAACATCAAA 123903
||| || | || ||||||
Sbjct 5093 GTCATCCATAATATCAAA 5076
>seq18917
Length=3610
Score = 167 bits (184), Expect = 3e-36
Identities = 287/414 (69%), Gaps = 2/414 (0%)
Strand=Plus/Minus
Query 124619 GCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTAT 124678
||||| | || || |||||||| |||||| |||||||||||||| || | | | |
Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546
Query 124679 GATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACC 124738
|||||||||| | ||||| || | | ||||| | ||||| | || |
Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486
Query 124739 AACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGG 124798
| | |||||||||||| || || | |||||||||||| | ||| ||||||||||| ||
Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426
Query 124799 TAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTA 124858
|| || || | || ||||| || | |||| || ||||| || || || |||||
Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366
Query 124859 CCATATAAGAA-AGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGC 124917
|| || ||||| ||| || | || ||||| | || || || ||||| || ||||| ||
Sbjct 3365 CCGTA-AAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGC 3307
Query 124918 TGCAATAAATGCAACGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAAC 124977
||||| ||||| | || ||| | | ||| || | |||| |||||||| | |||
Sbjct 3306 AGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAAC 3247
Query 124978 ACCAAACCAACCAACATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031
||||||||| |||| |||| | ||| | || |||| ||| | ||||||
Sbjct 3246 ACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193
>seq12239
Length=6102
Score = 140 bits (154), Expect = 4e-28
Identities = 371/559 (66%), Gaps = 6/559 (1%)
Strand=Plus/Plus
Query 123347 CCCATCATGTGAA-ATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405
|||||||| || | |||| |||||||| || | || |||| | || | ||| |
Sbjct 69 CCCATCATATGTAGATGG-TTCAATGTCCAATTATAAAACTCTTGGAAAAAGAGGATGAA 127
Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465
||||| || | || ||||| || ||||| |||||||||| |||||| | ||
Sbjct 128 CCGAAATATAACCGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGACCT-GAGG 186
Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525
||| || |||||| | | || | || || | |||||||||||| ||| || ||
Sbjct 187 ATAAATTAGAAAGGCAGGAATAAAACCAGCAATTGGACCAGAGAATGCGATTGCATTATA 246
Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585
||||| | ||| || || | |||||||| | | ||| |||||||| | | |
Sbjct 247 AGGTCACAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 306
Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645
|| | | || | | ||||| ||| || || | ||| |||||||| ||
Sbjct 307 GAAAGCACTGTGGAGAGAAACAAAAACCCACAGGCCGTTTAATTGACACCAACGACTAAA 366
Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705
||||||||||||| | ||| | || || | | | ||| | | | | ||||
Sbjct 367 ATCTCCTTGTGCTTCATGACCC-ACAGTAATAACAAAGAATGCGCTAAACTATTAGCAGG 425
Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCT-CAAGATATGAAGATGCAATACCAT 123764
|| || ||||| | ||||| ||| ||| ||| | | ||| || || | ||||
Sbjct 426 AGTAGAAACTGCATCGGTTAA-AAGACTGCAACCTTCTAAATAGAAACTAGCCAATCCAT 484
Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824
| |||||||||| || || ||||| || ||| ||||||||| || | | | ||| |
Sbjct 485 GAATATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGG 544
Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884
||||||| | || || ||||||||||| |||| || || || || || ||| |||||
Sbjct 545 CACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACC 604
Query 123885 AGTCGTCAAGAACATCAAA 123903
|||| |||| || ||||||
Sbjct 605 AGTCATCAATAATATCAAA 623
>seq2063
Length=19953
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 14/212 (7%)
Strand=Plus/Plus
Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374
|||| || || |||||||| || || ||||| || || ||||||||||| || ||||| |
Sbjct 8224 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTATCCCTCCTAATATGCTGTTCCCTAGTCT 8283
Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC-------CACTGACTGACCTACA 139427
| | || | || |||| || |||| | || ||||||| ||| | |
Sbjct 8284 GCATAGCCA-----TACGCAGAGCTGGCTTCCCAGTAGAATCAACACTGAC--ACCAATA 8336
Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487
|| || ||||| ||| |||||||||||| | | || || || || ||||| || |||
Sbjct 8337 ATCCTCCCAGGCATCATTCTCTTATACTCTCCCGAAGTAGCCAAAAACGCAGCGTGGGGA 8396
Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTG 139519
|| ||||| ||||| |||| ||||||||| ||
Sbjct 8397 CCACCGTAACCCATCGGAACACCAAACCTCTG 8428
Score = 93.3 bits (102), Expect = 5e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220
|||||||| | |||||| |||||||| ||||| | ||||| || |||||||||||
Sbjct 6443 AAATGGTGCTAAATGTTTCTTCACACCAATGGGACCCATTCCAGGCCCACCACCTCCATG 6502
Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269
||||||||||| ||||| || | ||| ||||| || ||||| || |||
Sbjct 6503 AGGAATACAGAAAGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 6551
>seq49459
Length=611
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 124505 ATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGC 124564
||||| ||||| || ||||| || | |||||||||||||||||| ||||| || || |||
Sbjct 562 ATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC 503
Query 124565 ATACCATCAGAGAA 124578
||||||||||| ||
Sbjct 502 ATACCATCAGAAAA 489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578529903444640
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