Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq521 134 2e-26 seq13279 127 2e-24 seq9289 109 7e-19 seq10203 100 3e-16 seq12321 96.9 4e-15 seq549 96.9 4e-15 seq9582 84.2 3e-11 >seq521 Length=33513 Score = 134 bits (148), Expect = 2e-26 Identities = 300/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||||||| | || ||||| | || ||| || | ||| || ||| Sbjct 24175 GTGGAGTTTCTCAAGAAGCCTGAGAGGTTCACTGCTGTTGGCGCGAGGATTCCGAAAGGT 24234 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||| |||| ||| || ||||| ||||| || ||| | || ||||| || ||| Sbjct 24235 GTCCTCCTCGTTGGTCCTCCCGGTACTGGAAAAACACTCTTGGCAAAGGCCATTGCCGGT 24294 Query 175357 GAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGG 175415 ||| | ||| || || | || | ||||| | | ||||| |||||||| || || Sbjct 24295 GAAGCTGGTGTGCCTTTTTTTTCAAT-CTCTGGTTCTGAGTTTGTTGAGATGTTCGTCGG 24353 Query 175416 TGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTAT 175475 ||| ||||| ||||| || ||||| || ||| ||| || ||| || || || Sbjct 24354 TGTTGGTGCTTCGAGGGTCCGTGATCTTTTCAAAAAGGCCAAGGAGAATGCTCCCTGCAT 24413 Query 175476 TGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCA 175533 |||||| ||||||||||||| || || || | ||| | | |||| | | | | Sbjct 24414 TGTCTTTGTTGATGAGATTGACGCTGTCGGTAGGCAGAGAGGGACTGGAATCGGTGG--A 24471 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||||||||||||||| || |||| || || | || ||||||||||| ||||| Sbjct 24472 GGGAATGACGAGAGAGAACAGACGCTTAACCAGCTCTTGACGGAGATGGATGGTTTTGAA 24531 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCC 175653 | | ||||| | | || |||| || || || | | ||||| ||||| |||| Sbjct 24532 GGTAACACTGGTGTGATCGTAGTTGCTGCAACCAACAGAGCAGATATTCTTGACTCCGCC 24591 Query 175654 CTCCTTCGCCCGGGTCGTTTTGATCG 175679 | ||| | || || |||||||| || Sbjct 24592 TTGCTTAGACCAGGCCGTTTTGACCG 24617 >seq13279 Length=5599 Score = 127 bits (140), Expect = 2e-24 Identities = 302/451 (67%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||||||| | || ||||| | || |||||| |||||| Sbjct 469 GAGGTGGTGGAGTTTCTCAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCTCGGATCCCG 528 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||| |||| ||| || || || || || || || | || ||||| Sbjct 529 AAAGGTGTCCTCCTCGTTGGTCCTCCTGGCACTGGTAAAACTCTGTTAGCAAAGGCCATT 588 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409 || |||||| | ||| || ||| | || | ||||| | | || || |||||||| Sbjct 589 GCTGGTGAAGCTGGTGTGCCTTTCTTTTCAAT-CTCTGGTTCTGAGTTCGTTGAGATGTT 647 Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACC 175469 ||| ||||| ||||| ||||| || ||||| || ||| || || ||| || Sbjct 648 TGTGGGTGTTGGTGCTTCGAGGGTCCGTGATCTTTTCAAAAAGGCTAAGGAGAATGCTCC 707 Query 175470 ATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTAT 175529 || |||||||| | || ||||||||||| || || | ||| | | |||| | | Sbjct 708 TTGCATTGTCTTTGTGGACGAGATTGATGCTGTTGGTAGGCAGAGAGGGACTGG-GATCG 766 Query 175530 GCC-AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588 | || ||||| |||||||| || || ||||||| || | || ||||||||||| | Sbjct 767 GTGGAGGGAATGATGAGAGAGAGCAGACGCTTAATCAGCTCTTGACTGAGATGGATGGGT 826 Query 175589 TTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATG 175648 |||| | | ||||| || | || |||| || || ||| | | ||||| ||||| Sbjct 827 TTGAGGGTAACACTGGTGTTATTGTGGTTGCTGCAACCAATAGAGCTGATATTCTTGACT 886 Query 175649 ACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 |||| | || | || ||||||||||| || Sbjct 887 CCGCCTTGCTGAGACCAGGTCGTTTTGACCG 917 >seq9289 Length=7890 Score = 109 bits (120), Expect = 7e-19 Identities = 228/341 (67%), Gaps = 18/341 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || ||||| || || || ||| ||||| |||||| | ||| || ||| Sbjct 3241 CCCGGTACTGGGAAGACGCTTCTGGCGAAAGCTATCGCTGGTGAAGCTGGTGTGCCGTTC 3182 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | || || ||||||||||| ||||| |||||| |||||| Sbjct 3181 TTCTCCATCTCCGGGTCGGAGTTCGTTGAGATGTTTGTCGGTGTTGGTGCCTCGAGGGTT 3122 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || | | || || || || || |||||||| ||||||||||| Sbjct 3121 CGTGATCTTTTCAAGAAGGCTAAGGAGAACGCTCCTTGCATTGTCTTTGTTGATGAGATT 3062 Query 175495 GATGCGGTGGGCAAGCAACG-----CAG----CGCTGGTGGTATGCCAGCAAATGACGAG 175545 ||||| || || | |||| | ||| || |||||||| |||| ||| Sbjct 3061 GATGCTGTTGGTAGGCAAAGAGGGACAGGAATCGGTGGTGGTA---------ATGATGAG 3011 Query 175546 AGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGC 175605 || ||||| || | || || | || || ||||||||||| ||||| | | ||||| Sbjct 3010 AGGGAACAGACTTTGAACCAGTTGCTAACTGAGATGGATGGGTTTGAAGGTAACACTGGT 2951 Query 175606 ATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || | ||| |||| || || ||| | | || || ||||| Sbjct 2950 ATCATCGTTGTTGCTGCAACCAATAGAGCAGACATTCTTGA 2910 >seq10203 Length=7278 Score = 100 bits (110), Expect = 3e-16 Identities = 254/381 (67%), Gaps = 14/381 (4%) Strand=Plus/Plus Query 177549 GAAGCACATTTCAACAAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGCGACAACATATT 177607 |||| ||| | || ||||| |||| || | ||||| |||| | || || ||||| || | Sbjct 6169 GAAGGACACGTTAAGAAACT-CCTCGACGGTGTGTGACTCCTCAGTTGCCACAACGTAGT 6227 Query 177608 CATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGAC 177667 |||| | | || || || ||||| |||||||| || || || |||||| || | Sbjct 6228 CATCTGGTTTCTCCTGCTGCAGCATCAGCCACATTGCCTCCACGTAGTCCCCCGCGAATC 6287 Query 177668 CCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCT-CACCTTTCACA 177726 |||||||||| | || | | ||| || || | || || | ||| || | | | Sbjct 6288 CCCAGTCTCTCGACGCCTGTATGTTTCCCAGG---AAGAGCTTTGTCTGCAGC---CCGA 6341 Query 177727 ATTTGTTTGACGCCATCA-----GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCG 177781 ||| | | ||| || || ||| | || || |||| | ||||| | | Sbjct 6342 CCTTGATCCTCCCCAAGGCCCTTGTTATTTTCCTAGTCACGAAGTTCTCGCCTCGGCGGG 6401 Query 177782 GTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAAT 177841 |||| ||||||||||| ||||| ||| |||||| || | || || | ||||| ||||| Sbjct 6402 GTGACTCGTGGTTGAAAAGGATCCCGTTGCAGGCGTAGAGGCCGTATGCTTCTCTGTAAT 6461 Query 177842 TTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGG 177901 | | | |||||||||||| | ||||||| | ||||| |||| |||| || | Sbjct 6462 TGACGGTGTACCAGTGAGCGGCGACTTTGGAGGCAGCATAGGGAGATCTGGGGTGAAACG 6521 Query 177902 GTGTCTCCTCAGTTTGTGGAG 177922 | || ||||| ||| |||| Sbjct 6522 GAGTGGTCTCAGATTGGGGAG 6542 >seq12321 Length=6064 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | | ||||||||| ||||||| ||||| ||| | ||| Sbjct 1155 GCCATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGAC 1214 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | |||| | ||||| ||| | | | || || || || || || || |||||| Sbjct 1215 GGA---TCTCAGACTTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTC 1271 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||| | || | ||| | |||||||| || |||||||| || || Sbjct 1272 TTCTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTG 1331 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 |||||| || || || || || |||| ||||| || ||| Sbjct 1332 ACCTTCTCCAACGAGCTCATCTCGAGAGACGAGGGGCTTCAC 1373 >seq549 Length=32968 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGC 65080 |||| ||||| ||||||| |||| ||| | || | ||| ||||||||||| Sbjct 20132 AGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGATGG---GCCTCAGGCCTTCGCCGAGA 20188 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 | | | ||||| || || ||||| || ||||||||||| || |||||| | || | Sbjct 20189 GGATCGTGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGCTCGATCT 20248 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| |||||||||| || |||||||| || || |||||| || || || || || Sbjct 20249 TCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGCTGATCTCGA 20308 Query 65201 GAGATGAGGGTCTCCAC 65217 |||| || || |||||| Sbjct 20309 GAGACGAAGGCCTCCAC 20325 >seq9582 Length=7681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 12/200 (6%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||| | || || ||||||||||| |||||| | ||| | || || | || Sbjct 7293 TTTGTTGAGCTTTTCGTCGGTGTGGGTGCGTCTAGGGTTAGGGATTTGTTCGAGAAGGC- 7235 Query 175456 CGCGAAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 ||| ||| || || ||||| || || |||||||||||||| ||||| | ||| Sbjct 7234 ---GAAGGCCAAGGCGCCTTGCATTGTTTTTATCGATGAGATTGATGCTGTGGGGAGGCA 7178 Query 175512 ACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | | ||||| ||| | | || ||||| ||||| || || || |||||||| || Sbjct 7177 GAGAGGAGCTGGGATGGGAGG--AGGGAATGATGAGAGGGAGCAGACGATTAATCAGCTC 7120 Query 175570 CTCACCGAGATGGATGGCTT 175589 | || ||||||||||| || Sbjct 7119 TTGACTGAGATGGATGGGTT 7100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596086885708160