Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq43812 360 2e-94 seq18917 172 7e-38 >seq43812 Length=736 Score = 360 bits (398), Expect = 2e-94 Identities = 430/579 (74%), Gaps = 6/579 (1%) Strand=Plus/Minus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 578 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 519 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 518 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 461 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| || | |||| Sbjct 460 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 401 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 400 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 341 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| |||||||| |||| ||||| || || |||||||| Sbjct 340 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 282 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || |||||||||||||| || | || || | || ||| || | Sbjct 281 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATT 222 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || |||||||| ||||||||||| || || Sbjct 221 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 162 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 161 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 102 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 101 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 42 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACAC 8453 ||| || || ||||||| ||| || | ||||| || Sbjct 41 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAAC 3 >seq18917 Length=3610 Score = 172 bits (190), Expect = 7e-38 Identities = 281/405 (69%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 8460 AGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTA 8519 |||||| | || ||||| |||||| ||| ||||| || | |||||| | ||| | Sbjct 3606 AGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAA 3547 Query 8520 TGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAAC 8579 | ||||||| | |||||| ||| || | |||| | ||||| | | || Sbjct 3546 ACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAAT 3487 Query 8580 CAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGG 8639 | | ||| ||||| ||||| || | ||| ||||| | | ||||||||||| || || Sbjct 3486 TAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGG 3427 Query 8640 ATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTT 8699 ||| || || || |||||||| |||| |||| | ||||| || || || ||||| Sbjct 3426 ATAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTT 3367 Query 8700 TCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGC 8759 ||| || | | || || | |||||||||||||||||| || ||||| || || ||||| Sbjct 3366 TCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGC 3307 Query 8760 AGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAAC 8819 |||||| ||||| | ||||| | || || | || ||| ||||||||| | ||| Sbjct 3306 AGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAAC 3247 Query 8820 TCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 |||||||| || | ||||| | ||| | ||||| || | ||| Sbjct 3246 ACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCA 3202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615364074939040