Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq43812 347 4e-91 seq18917 181 3e-41 >seq43812 Length=736 Score = 347 bits (384), Expect = 4e-91 Identities = 416/565 (74%), Gaps = 0/565 (0%) Strand=Plus/Plus Query 41652 CTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGA 41711 |||| ||| | | || || |||| || || ||||||||||| |||||| | || | Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60 Query 41712 TATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATC 41771 | || || || ||||||| ||| | || ||||||||||||||||| ||||||||||| | Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120 Query 41772 CTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACG 41831 | ||||||||| | ||||| || || ||||| || || | || ||||||||| | Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180 Query 41832 GTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATG 41891 || |||| || || | || | || || || ||| | | || || | | Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240 Query 41892 GTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTG 41951 | |||| || |||||||| ||||| |||||||| ||||| ||||||||||| ||||||| Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300 Query 41952 GTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTG 42011 | || | ||||||||||||||||| || || ||||| ||| | | |||||||| | | Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360 Query 42012 CTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCA 42071 | || ||||| || ||||||||||||||| |||| | || | ||| |||||||||| Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420 Query 42072 ACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACA 42131 || | ||||||||||| || |||||||| | | | | | | |||| || || || | Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480 Query 42132 CCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACG 42191 | |||||||| ||| |||||||||| |||||||| | || || |||||||| || || | Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 540 Query 42192 CACACAACTTCCCGCTTGACCTTGC 42216 | ||||||||||| || ||||| || Sbjct 541 CTCACAACTTCCCTCTAGACCTAGC 565 >seq18917 Length=3610 Score = 181 bits (200), Expect = 3e-41 Identities = 277/392 (71%), Gaps = 2/392 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | |||||||| | ||| ||| |||| || Sbjct 3220 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACCTTATTGACCGCAAC 3278 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 | |||||||||||| || ||| || || || || || || ||||| || || || Sbjct 3279 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 3338 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || || | || || ||||| || || ||||| ||| | |||| | Sbjct 3339 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 3398 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | || || || || || ||||||||||| | |||||||||| Sbjct 3399 TTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATG 3458 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 ||| |||||||| ||||| | |||| | || | ||||| | |||| || | Sbjct 3459 GCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 3518 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||| ||||| || |||||||||||||| | || || || ||| | || ||||| ||| Sbjct 3519 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 3578 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTG 41651 ||| || || |||||||| || ||||| |||| Sbjct 3579 TGCATATTCAGCTCCTGTTGCAGCTGCTACTG 3610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146102006087328