Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq43812 363 4e-96 seq18917 233 5e-57 seq293 113 1e-20 >seq43812 Length=736 Score = 363 bits (402), Expect = 4e-96 Identities = 420/562 (75%), Gaps = 3/562 (1%) Strand=Plus/Plus Query 42712 TTCCTTG-TCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTC 42770 || |||| |||| ||| |||| ||||| |||||| ||||| |||||||| || || || Sbjct 5 TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 64 Query 42771 CGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTT 42830 ||||| |||||||| ||| | || ||||||||||| || |||||||||||||| || || Sbjct 65 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 124 Query 42831 CCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAG 42890 || ||| | ||||| || || ||||| || || || | || |||||||||||| Sbjct 125 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 184 Query 42891 TCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTA 42950 | | || || ||| | | | | ||||| || ||||| ||| ||| | || || Sbjct 185 TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTA 244 Query 42951 CAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACG 43010 || ||||||||||| || || ||||| |||||||| || || || ||||| ||||| || Sbjct 245 CAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCG 304 Query 43011 GCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCG 43069 | |||||||||||||| | |||| || ||| ||| ||||| || ||||| | || | Sbjct 305 ATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGG 363 Query 43070 CTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACT 43129 ||||||| || || || |||||||| ||| || | || | ||||||||||| || ||| Sbjct 364 CTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 423 Query 43130 TGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTT 43189 | |||||||| || || ||||||||| | ||||||| ||| | ||| || ||||| Sbjct 424 TAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTT 483 Query 43190 GGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCAC 43249 ||||||||||| | || ||||| |||||||| | || || ||||| || || ||||| | Sbjct 484 GGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 543 Query 43250 ATAACTTCCCGCTTGATCTTGC 43271 | |||||||| || || || || Sbjct 544 ACAACTTCCCTCTAGACCTAGC 565 >seq18917 Length=3610 Score = 233 bits (258), Expect = 5e-57 Identities = 310/428 (72%), Gaps = 2/428 (0%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| || | ||||||||||| |||| |||||| Sbjct 3184 TGGGGTCGCTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTT 3243 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| |||||||||| | || | | | || || || ||||||| |||| ||||| Sbjct 3244 GGTGTTTTGATGATTCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCAT 3302 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 3303 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 3362 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || ||||| | ||||| Sbjct 3363 CGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTT 3422 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 ||| ||||||||||||| || |||| |||||||| ||||| || || |||||| | Sbjct 3423 TTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGA 3482 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | ||||| | | ||| | | ||| |||| || || |||||||| Sbjct 3483 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 3542 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 3543 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 3602 Query 42699 AGCGACTG 42706 || |||| Sbjct 3603 TGCTACTG 3610 >seq293 Length=39549 Score = 113 bits (124), Expect = 1e-20 Identities = 171/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 42329 TTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATT 42387 |||| | ||||||||| ||||||| || | ||| | | || ||||||| ||| Sbjct 25948 TTGGATAGTTTGGTGTTTTGATGAT-CCTTATCTTATTGACCGTAGTTTCTGTTTTTATT 26006 Query 42388 GTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGC 42447 |||| ||||||||||| ||| ||||| |||| ||| ||| |||||||| | ||| | Sbjct 26007 ATCGCATTCATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAACCTATTTCTCGA 26066 Query 42448 TCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATT 42507 | |||||| ||||| ||| | || || || |||||| | | | || || || ||| Sbjct 26067 TATCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTACAGCTATT 26126 Query 42508 GGACTACATTTGTATTCGATCTGGGAAGC--CAATACCCTTGACGAATGGCTCTACAAT 42564 || | ||||| ||||| ||||||||||| || | ||| |||||||| |||||| Sbjct 26127 GGTTTGCATTTTTATTCAATCTGGGAAGCTGCATT--TGTTGGTGAATGGCTATACAAT 26183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143422467413136