Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq43812 325 1e-84 seq18917 183 9e-42 seq49459 82.4 2e-11 >seq43812 Length=736 Score = 325 bits (360), Expect = 1e-84 Identities = 410/563 (73%), Gaps = 0/563 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || |||||| Sbjct 565 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 506 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| || | ||| | | ||| |||||||| Sbjct 505 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 446 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| || | ||||| | || || | | Sbjct 445 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 386 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || |||||||||| || | |||||||| | |||||| || || ||| Sbjct 385 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 326 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || ||||| ||||| ||||| || || || Sbjct 325 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 266 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 265 TCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 206 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| |||||| || ||||||||| || || | || ||||| || Sbjct 205 ATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 146 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||||||||| || || || || || || |||||||| Sbjct 145 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 86 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| |||||||||||||| || |||||||| |||||| |||||| ||||| Sbjct 85 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 26 Query 26417 CCGAAAGGATAAACTAAGAACAC 26439 || | || || | ||||| || Sbjct 25 CCAATTGGGTAGATCAAGAAAAC 3 >seq18917 Length=3610 Score = 183 bits (202), Expect = 9e-42 Identities = 281/401 (70%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518 || |||| |||||||||| ||||| || | ||| || || | | || ||||||||| Sbjct 3593 GGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCAC 3534 Query 26519 TGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGT 26578 | | || ||| ||||| || | ||| ||||| | | ||| |||| ||| || Sbjct 3533 TCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGA 3474 Query 26579 CCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGT 26638 || || ||||||||||| || || | | |||||||||||||||| |||||||| | Sbjct 3473 CCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGATAAAAATGCAAA 3414 Query 26639 CCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAAC 26698 || || || ||| | || | | || ||||| || |||||||||||||| | | Sbjct 3413 CCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGA 3354 Query 26699 GAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCA 26758 || || ||||| || ||||| || ||||| |||||||| || || || || ||||| || Sbjct 3353 GATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCG 3294 Query 26759 AGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCC 26818 | |||||| | ||| || | | |||| || ||||| | || || |||||||| Sbjct 3293 ATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACACCAAACCATCCA 3234 Query 26819 ACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 | || |||||||| || ||||| || | ||| | ||| || Sbjct 3233 ATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193 >seq49459 Length=611 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 26332 TATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGG 26391 ||| || || || || |||||||| | ||||||||| |||||||||||||| || ||||| Sbjct 563 TATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGG 504 Query 26392 CATTCCATCACTAAAACT 26409 ||| |||||| |||||| Sbjct 503 CATACCATCAGAAAAACT 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147598454893440