Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq43812 347 3e-91 seq18917 206 8e-49 seq49459 82.4 2e-11 >seq43812 Length=736 Score = 347 bits (384), Expect = 3e-91 Identities = 423/577 (73%), Gaps = 0/577 (0%) Strand=Plus/Minus Query 40521 GACTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCC 40580 |||||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| |||||| Sbjct 577 GACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCC 518 Query 40581 ATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG 40640 ||||| || | | ||||| || ||||||||||||| ||| || || | | Sbjct 517 ATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTA 458 Query 40641 TCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCC 40700 || |||||||| ||||| || || |||||||| ||||| |||||||||||| ||||| Sbjct 457 TCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCT 398 Query 40701 ATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGG 40760 | | |||| ||| || || | ||||| |||| | | ||||| |||| | ||| Sbjct 397 AAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGA 338 Query 40761 CTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACG 40820 ||||||||| ||||||||| || || | || ||||| |||||||| |||||||| Sbjct 337 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACA 278 Query 40821 ATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCC 40880 ||||| ||||| || |||| ||||| || | ||||| | || |||||| |||| Sbjct 277 ATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCT 218 Query 40881 GTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 ||||| |||| || | ||||| || | || ||||||||| ||| | | Sbjct 217 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAG 158 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || || || | ||| || ||||||||||| ||||||||||| || Sbjct 157 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 98 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| Sbjct 97 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 38 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAG 41097 ||| || ||||| | ||| || | ||||| |||| Sbjct 37 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 1 >seq18917 Length=3610 Score = 206 bits (228), Expect = 8e-49 Identities = 294/414 (71%), Gaps = 0/414 (0%) Strand=Plus/Minus Query 41102 AGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTA 41161 ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || | | | Sbjct 3606 AGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAA 3547 Query 41162 TGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAAT 41221 ||||||||||| | ||| || ||||| || | ||||||||| | ||||| Sbjct 3546 ACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAAT 3487 Query 41222 GAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGG 41281 |||| ||| || || |||||||||||||| || || | | | ||||||||||| || Sbjct 3486 TAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGG 3427 Query 41282 GTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTT 41341 || ||||| | || || || ||| | |||| | || || || ||||||||||| Sbjct 3426 ATAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTT 3367 Query 41342 CCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGC 41401 ||||| | | || || ||||| || ||||| || ||||| |||||||| || || || Sbjct 3366 TCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGC 3307 Query 41402 TGCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCAC 41461 || || || ||||| || ||| | || || || | ||| | |||||||| | || Sbjct 3306 AGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAAC 3247 Query 41462 ACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||||||| || | ||| || ||||| ||||| ||||| | ||||||||| || Sbjct 3246 ACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193 >seq49459 Length=611 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 40989 ATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGC 41048 |||||||| || || ||||| |||| ||| |||||||| || ||| |||||||| |||| Sbjct 562 ATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC 503 Query 41049 ATACCATCAGAGAAA 41063 ||||||||||| ||| Sbjct 502 ATACCATCAGAAAAA 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143591937042888