Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 414 1e-110
seq18917 201 1e-46
seq293 87.8 2e-12
>seq43812
Length=736
Score = 414 bits (458), Expect = 1e-110
Identities = 441/581 (76%), Gaps = 6/581 (1%)
Strand=Plus/Minus
Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408
||||||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 578 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 519
Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468
||| ||||| || | ||||| || || ||||||||| ||| || || |||
Sbjct 518 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 462
Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525
||||| || ||||||||||| |||||||| || |||||||| |||||||| |
Sbjct 461 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 402
Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585
||| | ||||| ||||| || | || || || | || || | |||||| || | |
Sbjct 401 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 342
Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645
| || ||||||||| ||||| ||||||||||| || || || || || ||||||||
Sbjct 341 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 282
Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705
|||||||||||||| ||||||||||| ||||| |||| || | || || || |
Sbjct 281 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATT 222
Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765
|| || ||||| ||||| | | |||||| || | |||||| |||||||||||||| ||
Sbjct 221 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 162
Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825
|| || ||||||||||| ||||| || | ||| || |||||||||||||| ||||||||
Sbjct 161 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 102
Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885
||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||
Sbjct 101 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 42
Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAG 67926
||| ||| |||||||| | || |||| |||||| ||||
Sbjct 41 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 1
>seq18917
Length=3610
Score = 201 bits (222), Expect = 1e-46
Identities = 274/379 (72%), Gaps = 15/379 (4%)
Strand=Plus/Minus
Query 67932 GCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAA 67991
|||||| || ||||| || ||||| ||| ||||||||||||||||| |||||| ||
Sbjct 3602 GCTGCA---ACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546
Query 67992 GAAAGTTCCCACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACT 68048
||||||||||| |||||| | | | ||| | || | | ||||| | ||
Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACA 3489
Query 68049 ACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATA 68108
| |||| |||| ||||| || || | ||| ||||| | | ||| |||||||||||
Sbjct 3488 ATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATC 3429
Query 68109 GGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTG 68168
||||| || || | ||| || || ||| |||||| || ||||| ||||| || |||
Sbjct 3428 GGATAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTG 3369
Query 68169 TTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGT 68228
|| ||||| | || || || | ||||||||| | |||||||| ||||| ||||||||
Sbjct 3368 TTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGA 3309
Query 68229 GCTGCAATGAATGCAATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATC 68285
|| ||||||||||| || || || | ||||||| | | ||| ||||||||||
Sbjct 3308 GCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTC---AATAAGGTAGGAATCATC 3252
Query 68286 AACACACCGAACCAACCAA 68304
|| ||||| ||||| ||||
Sbjct 3251 AAAACACCAAACCATCCAA 3233
>seq293
Length=39549
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 68069 ATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGAT 68128
||| || | ||| ||| | | | ||| ||||||||||| | ||| || || | ||| ||
Sbjct 26183 ATTGTATAGCCATTCACCAACAAATGCAGCTTCCCAGATTGAATAAAAATGCAAACCAAT 26124
Query 68129 TGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACC 68188
|| | ||| || ||| || ||||| ||||| || | ||| || || | || | |
Sbjct 26123 AGCTGTAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGATATCG 26064
Query 68189 TGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGAT 68248
| || |||||| | |||||| | ||||| ||| ||| || ||||||||||| || ||
Sbjct 26063 AGAAATAGGTTCACAAATACCACCAATATCTACTAAAGGAGCAGCAATGAATGCGATAAT 26004
Query 68249 GAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304
|| || || | | | ||| | | |||||||| ||||| ||| | ||||
Sbjct 26003 AAAAACAGAAACTACGGTCAATAAGATAAGGATCATCAAAACACCAAACTATCCAA 25948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566488454673120
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