Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq43812 414 1e-110 seq18917 201 1e-46 seq293 87.8 2e-12 >seq43812 Length=736 Score = 414 bits (458), Expect = 1e-110 Identities = 441/581 (76%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 ||||||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 578 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 519 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 518 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 462 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 461 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 402 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 401 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 342 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||||||||| || || || || || |||||||| Sbjct 341 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 282 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| |||| || | || || || | Sbjct 281 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATT 222 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | |||||| |||||||||||||| || Sbjct 221 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 162 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 161 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 102 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 101 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 42 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAG 67926 ||| ||| |||||||| | || |||| |||||| |||| Sbjct 41 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 1 >seq18917 Length=3610 Score = 201 bits (222), Expect = 1e-46 Identities = 274/379 (72%), Gaps = 15/379 (4%) Strand=Plus/Minus Query 67932 GCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAA 67991 |||||| || ||||| || ||||| ||| ||||||||||||||||| |||||| || Sbjct 3602 GCTGCA---ACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546 Query 67992 GAAAGTTCCCACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACT 68048 ||||||||||| |||||| | | | ||| | || | | ||||| | || Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACA 3489 Query 68049 ACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATA 68108 | |||| |||| ||||| || || | ||| ||||| | | ||| ||||||||||| Sbjct 3488 ATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATC 3429 Query 68109 GGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTG 68168 ||||| || || | ||| || || ||| |||||| || ||||| ||||| || ||| Sbjct 3428 GGATAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTG 3369 Query 68169 TTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGT 68228 || ||||| | || || || | ||||||||| | |||||||| ||||| |||||||| Sbjct 3368 TTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGA 3309 Query 68229 GCTGCAATGAATGCAATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATC 68285 || ||||||||||| || || || | ||||||| | | ||| |||||||||| Sbjct 3308 GCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTC---AATAAGGTAGGAATCATC 3252 Query 68286 AACACACCGAACCAACCAA 68304 || ||||| ||||| |||| Sbjct 3251 AAAACACCAAACCATCCAA 3233 >seq293 Length=39549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68069 ATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGAT 68128 ||| || | ||| ||| | | | ||| ||||||||||| | ||| || || | ||| || Sbjct 26183 ATTGTATAGCCATTCACCAACAAATGCAGCTTCCCAGATTGAATAAAAATGCAAACCAAT 26124 Query 68129 TGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACC 68188 || | ||| || ||| || ||||| ||||| || | ||| || || | || | | Sbjct 26123 AGCTGTAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGATATCG 26064 Query 68189 TGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGAT 68248 | || |||||| | |||||| | ||||| ||| ||| || ||||||||||| || || Sbjct 26063 AGAAATAGGTTCACAAATACCACCAATATCTACTAAAGGAGCAGCAATGAATGCGATAAT 26004 Query 68249 GAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || || || | | | ||| | | |||||||| ||||| ||| | |||| Sbjct 26003 AAAAACAGAAACTACGGTCAATAAGATAAGGATCATCAAAACACCAAACTATCCAA 25948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566488454673120