Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 598 5e-166
seq43812 410 1e-109
seq18917 266 4e-66
seq12239 192 7e-44
seq8879 93.3 5e-14
seq11249 91.5 2e-13
>seq6139
Length=10899
Score = 598 bits (662), Expect = 5e-166
Identities = 741/1010 (73%), Gaps = 8/1010 (1%)
Strand=Plus/Minus
Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645
||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || |
Sbjct 6093 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 6034
Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705
|||| || |||| ||| || |||| |||||| || || ||||| || || || ||||
Sbjct 6033 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 5974
Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765
| ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| ||||
Sbjct 5973 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 5914
Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825
| ||||| | ||| ||||| | | || | | ||| |||| | ||| | || || |
Sbjct 5913 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTA 5854
Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885
|||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || |
Sbjct 5853 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 5794
Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945
|||| |||||||| || || |||||||| ||||||||||| ||||||| | || || |
Sbjct 5793 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 5734
Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005
| ||| || ||||| |||||||||||| | | |||||| ||||| ||| ||||||
Sbjct 5733 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 5674
Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065
|||| || | | || || | ||||| | ||| || || |||||||||||||| ||||
Sbjct 5673 GAATAGCGCATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGT 5614
Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125
|||| ||||| ||||| || ||||| | ||||| | ||||||||| || || | || |
Sbjct 5613 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 5554
Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185
| ||| || || || ||||||| ||||||||| || || || || ||||||||| ||
Sbjct 5553 CAAAACTAGGCGCAAAGAACCAACCCGATTGACCTAGTGGATAAATTAGAAAGACAGAAA 5494
Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244
|||||||||| || ||||||||||| || || ||||| || || || | | || |||
Sbjct 5493 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 5435
Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304
|| || |||||||| || || | ||| ||||| |||| |||||||| |||||||| ||
Sbjct 5434 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGAGAGCA 5375
Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364
|||||| ||| || || || | ||| ||| || ||||| || || | ||||||
Sbjct 5374 ACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 5315
Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424
||||| |||| | | |||||| | | | || |||||| || || || || || ||
Sbjct 5314 CCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTT 5255
Query 67425 AGAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481
| |||||| ||| || | || ||||| || | ||| ||||| ||||| ||
Sbjct 5254 AAAAAATTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTT 5198
Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541
||||| || ||||| || | ||| || || | || | ||| ||| ||||| || | |
Sbjct 5197 ACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAAT 5138
Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591
|| ||||||||||| ||||| || ||||| || | | |||||||||
Sbjct 5137 AGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATC 5088
>seq43812
Length=736
Score = 410 bits (454), Expect = 1e-109
Identities = 436/575 (76%), Gaps = 0/575 (0%)
Strand=Plus/Minus
Query 67831 GACTCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCC 67890
|||||| ||||||| ||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct 577 GACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCC 518
Query 67891 ATACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTA 67950
||||| | ||| ||||| | || || ||||| ||| | ||| || ||||
Sbjct 517 ATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTA 458
Query 67951 TCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCA 68010
|||| | || |||||||| ||||||||||| |||||||| ||||| || |||| |||
Sbjct 457 TCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCT 398
Query 68011 AGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGG 68070
| ||||| ||||| ||||| || || ||||| || || | |||||| || | |||||
Sbjct 397 AAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGA 338
Query 68071 GAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACA 68130
|| |||||||| ||||| |||||||||| || || || || || || ||||| |||
Sbjct 337 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACA 278
Query 68131 ATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCA 68190
||||||||||| ||||||||||||||||| |||| || | || || ||| ||||
Sbjct 277 ATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCT 218
Query 68191 GTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGAT 68250
|||||||| | | || |||||| |||| ||||||||||| ||||| || || ||
Sbjct 217 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAG 158
Query 68251 CCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCT 68310
|| || ||||| ||||| || || | ||| || || |||||||| || |||||||||||
Sbjct 157 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 98
Query 68311 GCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAG 68370
|| ||||| || | ||| |||||||||||||||| || || |||||||| | |||||
Sbjct 97 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 38
Query 68371 AACGAACCTTGACCGAAAGGATAGACCAGGAAGAC 68405
|| |||||||| | || |||| || ||| ||
Sbjct 37 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAAC 3
>seq18917
Length=3610
Score = 266 bits (294), Expect = 4e-66
Identities = 309/414 (75%), Gaps = 2/414 (0%)
Strand=Plus/Minus
Query 68413 GCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAG 68472
|| ||||||||||| || || ||||||||| ||||||||||||||||| ||||| |
Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546
Query 68473 GAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACG 68532
||||||||| ||||| ||||| || | | ||||| | ||||| | | |
Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486
Query 68533 AGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGA 68592
|||| |||||||||| ||||| | ||| ||||||| || ||| |||||||| || |||
Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426
Query 68593 TAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTA 68652
||||| || | |||||| || ||| |||||| || ||||| ||||| || |||||
Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366
Query 68653 CCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCA 68712
|| || ||||| || |||| ||||||||||||||||||||| || || || || ||||||
Sbjct 3365 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 3306
Query 68713 GCGATGAAGGCGACGATGAAACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGAC 68771
|| ||||| |||| || ||| | ||||| | ||| || ||||| ||||||| ||
Sbjct 3305 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG-GTAGGAATCATCAAAAC 3247
Query 68772 GCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825
|| ||||| |||| |||||| ||||| || || ||| | ||| | |||||
Sbjct 3246 ACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193
>seq12239
Length=6102
Score = 192 bits (212), Expect = 7e-44
Identities = 377/551 (68%), Gaps = 10/551 (2%)
Strand=Plus/Plus
Query 67047 CCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAAT 67106
||||||||||| | ||||||| ||||| |||| || |||| | ||||| | |||
Sbjct 69 CCCATCATATGTAGATGGTTCAATGTCCAATTATAAAACTCTTGGAAAAAGAGGATGAAC 128
Query 67107 CGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGG 67166
||||| || | | || || ||| || || || ||||||| |||||||| ||||
Sbjct 129 CGAAATATAACCGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGACCT-GAGGA 187
Query 67167 TAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAG 67226
|| || |||||| || || |||| |||| || ||||||||||| || || ||||| ||
Sbjct 188 TAAATTAGAAAGGCAGGAATAAAACCAGCAATTGGACCAGAGAATGCGATTGCATTATAA 247
Query 67227 GGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGC 67285
|| | | | || ||| || || |||||||| || || | ||| ||||| |||| ||
Sbjct 248 GGTCACA-ATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 306
Query 67286 GAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAA 67345
|||||| | |||||| | |||||| ||| || || | ||| ||| || ||
Sbjct 307 GAAAGCACTGTGGAGAGAAACAAAAACCCACAGGCCGTTTAATTGACACCAACGACTAAA 366
Query 67346 ATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGG 67405
||| || || | ||| ||||| | |||| | | |||||| | | | || ||||||
Sbjct 367 ATCTCCTTGTGCTTCATGACCC-ACAGTAATAACAAAGAATGCGCTAAACTATTAGCAGG 425
Query 67406 CGTTGACACAGCCGCTGTGAGAAAATTAGCACCCTCAAGATA---ACTAGACGCGAGTCC 67462
|| || || || | || | || | | ||| || | ||| ||||| | | |||
Sbjct 426 AGTAGAAACTGCATCGGTTAAAAGACTGCAACCTTCTAAATAGAAACTAGCC---AATCC 482
Query 67463 GTGAGTGTACCAGCTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATA 67522
||| | ||||| || ||||| || ||||| || | ||| || || | || | |||
Sbjct 483 ATGAATATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATA 542
Query 67523 AGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAG 67582
||| ||||| || | ||| ||||||||||| ||||| || ||||| || | |
Sbjct 543 GGCACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAA 602
Query 67583 CCAGTCATCAA 67593
|||||||||||
Sbjct 603 CCAGTCATCAA 613
>seq8879
Length=8198
Score = 93.3 bits (102), Expect = 5e-14
Identities = 121/165 (73%), Gaps = 3/165 (2%)
Strand=Plus/Plus
Query 67043 TACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAG 67102
||| || |||||||||| ||||||| ||||| ||||| || | ||| | |||||||
Sbjct 6834 TACTCCTATCATATGAATTAGGTTCAATGTCCAATTATGAAACCTTTGAAA-AAGAGAAT 6892
Query 67103 GAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAG 67162
||||||||| || || || || ||| || || || ||||||| |||||| |
Sbjct 6893 GAATCGAAATATAGCCACTACACCAAAACTAGGCGCAAATAACCAACCACATTGACATAA 6952
Query 67163 AGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGA 67207
|| || || ||||||||| |||||||||||| || || ||||
Sbjct 6953 TGGATAAATTAGAAAGACA--AACAAAAACAGCAATTGGGTCAGA 6995
>seq11249
Length=6651
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| ||
Sbjct 883 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 940
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| || |||||||||||||||
Sbjct 941 TCTACCACTGAGCTACTGAGGA 962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571591522182240
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