Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq6139 598 5e-166 seq43812 410 1e-109 seq18917 266 4e-66 seq12239 192 7e-44 seq8879 93.3 5e-14 seq11249 91.5 2e-13 >seq6139 Length=10899 Score = 598 bits (662), Expect = 5e-166 Identities = 741/1010 (73%), Gaps = 8/1010 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 6093 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 6034 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| || |||| |||||| || || ||||| || || || |||| Sbjct 6033 GATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 5974 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 5973 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 5914 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | ||| ||||| | | || | | ||| |||| | ||| | || || | Sbjct 5913 GTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTA 5854 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 5853 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 5794 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| ||||||||||| ||||||| | || || | Sbjct 5793 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 5734 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 5733 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 5674 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | | || || | ||||| | ||| || || |||||||||||||| |||| Sbjct 5673 GAATAGCGCATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGT 5614 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| || ||||| | ||||| | ||||||||| || || | || | Sbjct 5613 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 5554 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| ||||||||| || || || || ||||||||| || Sbjct 5553 CAAAACTAGGCGCAAAGAACCAACCCGATTGACCTAGTGGATAAATTAGAAAGACAGAAA 5494 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || ||||||||||| || || ||||| || || || | | || ||| Sbjct 5493 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 5435 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||| ||||| |||| |||||||| |||||||| || Sbjct 5434 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGAGAGCA 5375 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| ||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 5374 ACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 5315 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | |||||| | | | || |||||| || || || || || || Sbjct 5314 CCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTT 5255 Query 67425 AGAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 | |||||| ||| || | || ||||| || | ||| ||||| ||||| || Sbjct 5254 AAAAAATTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTT 5198 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| || ||||| || | ||| || || | || | ||| ||| ||||| || | | Sbjct 5197 ACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAAT 5138 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || ||||||||||| ||||| || ||||| || | | ||||||||| Sbjct 5137 AGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATC 5088 >seq43812 Length=736 Score = 410 bits (454), Expect = 1e-109 Identities = 436/575 (76%), Gaps = 0/575 (0%) Strand=Plus/Minus Query 67831 GACTCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCC 67890 |||||| ||||||| ||||| |||||||||||||| || ||||| ||||||||||||||| Sbjct 577 GACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCC 518 Query 67891 ATACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTA 67950 ||||| | ||| ||||| | || || ||||| ||| | ||| || |||| Sbjct 517 ATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTA 458 Query 67951 TCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCA 68010 |||| | || |||||||| ||||||||||| |||||||| ||||| || |||| ||| Sbjct 457 TCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCT 398 Query 68011 AGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGG 68070 | ||||| ||||| ||||| || || ||||| || || | |||||| || | ||||| Sbjct 397 AAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGA 338 Query 68071 GAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACA 68130 || |||||||| ||||| |||||||||| || || || || || || ||||| ||| Sbjct 337 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACA 278 Query 68131 ATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCA 68190 ||||||||||| ||||||||||||||||| |||| || | || || ||| |||| Sbjct 277 ATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCT 218 Query 68191 GTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGAT 68250 |||||||| | | || |||||| |||| ||||||||||| ||||| || || || Sbjct 217 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAG 158 Query 68251 CCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCT 68310 || || ||||| ||||| || || | ||| || || |||||||| || ||||||||||| Sbjct 157 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 98 Query 68311 GCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAG 68370 || ||||| || | ||| |||||||||||||||| || || |||||||| | ||||| Sbjct 97 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 38 Query 68371 AACGAACCTTGACCGAAAGGATAGACCAGGAAGAC 68405 || |||||||| | || |||| || ||| || Sbjct 37 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAAC 3 >seq18917 Length=3610 Score = 266 bits (294), Expect = 4e-66 Identities = 309/414 (75%), Gaps = 2/414 (0%) Strand=Plus/Minus Query 68413 GCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAG 68472 || ||||||||||| || || ||||||||| ||||||||||||||||| ||||| | Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546 Query 68473 GAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACG 68532 ||||||||| ||||| ||||| || | | ||||| | ||||| | | | Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486 Query 68533 AGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGA 68592 |||| |||||||||| ||||| | ||| ||||||| || ||| |||||||| || ||| Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426 Query 68593 TAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTA 68652 ||||| || | |||||| || ||| |||||| || ||||| ||||| || ||||| Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366 Query 68653 CCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCA 68712 || || ||||| || |||| ||||||||||||||||||||| || || || || |||||| Sbjct 3365 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 3306 Query 68713 GCGATGAAGGCGACGATGAAACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGAC 68771 || ||||| |||| || ||| | ||||| | ||| || ||||| ||||||| || Sbjct 3305 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG-GTAGGAATCATCAAAAC 3247 Query 68772 GCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 || ||||| |||| |||||| ||||| || || ||| | ||| | ||||| Sbjct 3246 ACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193 >seq12239 Length=6102 Score = 192 bits (212), Expect = 7e-44 Identities = 377/551 (68%), Gaps = 10/551 (2%) Strand=Plus/Plus Query 67047 CCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAAT 67106 ||||||||||| | ||||||| ||||| |||| || |||| | ||||| | ||| Sbjct 69 CCCATCATATGTAGATGGTTCAATGTCCAATTATAAAACTCTTGGAAAAAGAGGATGAAC 128 Query 67107 CGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGG 67166 ||||| || | | || || ||| || || || ||||||| |||||||| |||| Sbjct 129 CGAAATATAACCGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGACCT-GAGGA 187 Query 67167 TAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAG 67226 || || |||||| || || |||| |||| || ||||||||||| || || ||||| || Sbjct 188 TAAATTAGAAAGGCAGGAATAAAACCAGCAATTGGACCAGAGAATGCGATTGCATTATAA 247 Query 67227 GGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGC 67285 || | | | || ||| || || |||||||| || || | ||| ||||| |||| || Sbjct 248 GGTCACA-ATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 306 Query 67286 GAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAA 67345 |||||| | |||||| | |||||| ||| || || | ||| ||| || || Sbjct 307 GAAAGCACTGTGGAGAGAAACAAAAACCCACAGGCCGTTTAATTGACACCAACGACTAAA 366 Query 67346 ATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGG 67405 ||| || || | ||| ||||| | |||| | | |||||| | | | || |||||| Sbjct 367 ATCTCCTTGTGCTTCATGACCC-ACAGTAATAACAAAGAATGCGCTAAACTATTAGCAGG 425 Query 67406 CGTTGACACAGCCGCTGTGAGAAAATTAGCACCCTCAAGATA---ACTAGACGCGAGTCC 67462 || || || || | || | || | | ||| || | ||| ||||| | | ||| Sbjct 426 AGTAGAAACTGCATCGGTTAAAAGACTGCAACCTTCTAAATAGAAACTAGCC---AATCC 482 Query 67463 GTGAGTGTACCAGCTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATA 67522 ||| | ||||| || ||||| || ||||| || | ||| || || | || | ||| Sbjct 483 ATGAATATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATA 542 Query 67523 AGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAG 67582 ||| ||||| || | ||| ||||||||||| ||||| || ||||| || | | Sbjct 543 GGCACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAA 602 Query 67583 CCAGTCATCAA 67593 ||||||||||| Sbjct 603 CCAGTCATCAA 613 >seq8879 Length=8198 Score = 93.3 bits (102), Expect = 5e-14 Identities = 121/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 67043 TACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAG 67102 ||| || |||||||||| ||||||| ||||| ||||| || | ||| | ||||||| Sbjct 6834 TACTCCTATCATATGAATTAGGTTCAATGTCCAATTATGAAACCTTTGAAA-AAGAGAAT 6892 Query 67103 GAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAG 67162 ||||||||| || || || || ||| || || || ||||||| |||||| | Sbjct 6893 GAATCGAAATATAGCCACTACACCAAAACTAGGCGCAAATAACCAACCACATTGACATAA 6952 Query 67163 AGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGA 67207 || || || ||||||||| |||||||||||| || || |||| Sbjct 6953 TGGATAAATTAGAAAGACA--AACAAAAACAGCAATTGGGTCAGA 6995 >seq11249 Length=6651 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| || Sbjct 883 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 940 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 941 TCTACCACTGAGCTACTGAGGA 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571591522182240