Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq964 95.1 2e-14 seq1703 87.8 3e-12 >seq964 Length=27231 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| | || || ||||| | || | ||| || ||||| || ||| Sbjct 9722 ATACCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAATCG 9663 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||| ||||| || || | ||||| || || ||| Sbjct 9662 GCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGA 9603 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | || || |||||||| ||| Sbjct 9602 GGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCGGAGCTCTCG 9543 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || ||||| || || |||||||| Sbjct 9542 ACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCAT 9493 >seq1703 Length=21771 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || || |||||||| || || ||||| || ||||| || || ||||| || Sbjct 18439 ATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGGATCCCTTCCTT 18498 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || || | || | ||| |||||||||||| ||| || || | ||| || Sbjct 18499 ATCCTGAATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCCACCTCCAAAGTAAT 18558 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || | || || ||||| || ||||| Sbjct 18559 AGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 18594 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | | || || ||||||| || | ||| || |||||||| || Sbjct 18593 ATACCACCACGAAGCCTGAGAACGAGATGCAGAGTCGACTCCTTCTGTATATTATAATCA 18652 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || || || ||||| ||||| || | ||||| ||||| ||| Sbjct 18653 GCAAGAGTCCTCCCATCCTCCAACTGCTTTCCCGCAAAGATCAGCCTCTGCTGATCCGGA 18712 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||||||||| || | || | || || ||||| || ||| Sbjct 18713 GGGATCCCTTCCTTATCTTGTATCTTAGCCTTGACGTTGTCGATTGTATCAGAGCTCTCC 18772 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| ||||| || || || || || || || || || ||||| Sbjct 18773 ACCTCCAAAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 18822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898926444642240