Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1703 105 1e-17 seq964 84.2 3e-11 >seq1703 Length=21771 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || ||||| ||||| || || || ||||| || || ||| Sbjct 18366 ATGCAGATCTTCGTTAAGACGTTGACAGGAAAGACGATCACTTTAGAGGTGGAGAGTTCC 18307 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||||| ||||| ||||| || || ||||| || || Sbjct 18306 GACACCATTGACAACGTGAAAGCGAAAATCCAAGACAAAGAGGGTATCCCTCCGGACCAG 18247 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | || || ||||||||||| ||| | || || | ||||| || Sbjct 18246 CAGAGGCTGATATTCGCTGGGAAGCAGCTCGAGGATGGTCGCACCTTGGCTGATTACAAC 18187 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || |||||| |||| ||||| || |||||| Sbjct 18186 ATTCAGAAAGAGTCGACCCTTCACTTGGTGTTA 18154 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| |||||||| || || || || || Sbjct 18594 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 18535 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||| || || ||||| ||||| || || || || || Sbjct 18534 GATACTATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCTGACCAG 18475 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| |||||| | || ||| || ||| | | || || || Sbjct 18474 CAGAGGTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGGAGGACTCTTGCTGACTACAAC 18415 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | |||||||| || || || Sbjct 18414 ATCCAGAAAGAATCTACGCTTCACTTGGTCTT 18383 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || ||||| ||||| || || || || || ||| Sbjct 18822 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 18763 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || ||| ||||||||||| ||||| || ||||| || || Sbjct 18762 GATACAATCGACAACGTCAAGGCTAAGATACAAGATAAGGAAGGGATCCCTCCGGATCAG 18703 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || |||||| | || ||| || ||| | | ||||||||| Sbjct 18702 CAGAGGCTGATCTTTGCGGGAAAGCAGTTGGAGGATGGGAGGACTCTTGCTGATTATAAT 18643 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 ||| || ||| |||| || ||| Sbjct 18642 ATACAGAAGGAGTCGACTCTGCAT 18619 >seq964 Length=27231 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||| || || |||||||| || ||||| || || Sbjct 10405 ATGCAAATCTTTGTGAAGACTCTGACAGGCAAGACTATTACCTTGGAAGTTGAGAGCTCA 10464 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| |||||| || || || ||||| || ||||| || ||| Sbjct 10465 GACACAATCGACAATGTGAAGGCTAAAATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 10524 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | || ||||||||||| || ||| | || | | || || ||| Sbjct 10525 CAGAGACTCATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGCACGCTTGCTGACTACAAT 10584 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||||||||| || || Sbjct 10585 ATCCAGAAGGAGTCGACGCTTCACTTGGT 10613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731279805771200