Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq11485 104 5e-17 seq10768 95.1 2e-14 seq964 95.1 2e-14 seq4867 91.5 3e-13 >seq11485 Length=6519 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || || || | ||||| ||| || ||| || ||||||| Sbjct 5160 CCACCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCC 5101 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| || | ||||| ||||| ||||| | |||||| || || || || Sbjct 5100 AAAGTCCGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGG 5041 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || || ||| ||||| || | || || || ||| Sbjct 5040 ATGCCTTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCACT 4981 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||||||||| || | ||| || | || |||||||| Sbjct 4980 TCAAGGGTAATGGTTTTACCGGTGAGTGTCTTGACGAAAATCTGCAT 4934 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | |||| ||| || ||||| ||||| Sbjct 4935 ATACCACCACGGAGACGGAGGACGAGATGAAGCGTAGACTCCTTCTGAATATTGTAATCC 4876 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| |||| || | ||||||||||| ||||| | |||||| || || || Sbjct 4875 GCAAGCGTGCGTCCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGA 4816 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || ||| ||||| |||| || || || Sbjct 4815 GGAATTCCTTCCTTGTCCTGGATCTTTGCTTTCACATTGTCAATAGTGTCGGAGCTCTCA 4756 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||| || || || || || || | ||| |||||||| Sbjct 4755 ACCTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 4706 >seq10768 Length=6938 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||| | || || || || | ||| | |||||| ||| || || |||| Sbjct 3313 CCACCCCTAAGCCTCAAGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCG 3372 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | ||||| ||||||||||||| ||||||||||| |||||| Sbjct 3373 AGCGTTCGGCCATCCTCTAGCTGTTTCCCAGCAAAGATTAGCCTCTGTTGATCTGGTGGT 3432 Query 192430 ATTCCTTCTTTATCTTG 192446 || || |||||||| || Sbjct 3433 ATCCCCTCTTTATCCTG 3449 >seq964 Length=27231 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | ||| | |||| |||||| || || || ||| Sbjct 10178 ATGCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCA 10119 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| |||| || ||||| |||||||| | ||||| || || ||| Sbjct 10118 GCTAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGT 10059 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || |||||||| || || ||| || || || || | ||||| || Sbjct 10058 GGGATACCCTCTTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCA 9999 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||||||||| || | || || | ||| || ||||| Sbjct 9998 ACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | | || | ||| | ||| | ||| || |||||| ||||| Sbjct 9722 ATACCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAATCG 9663 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| || | |||||||| || ||||| | ||||| || || || Sbjct 9662 GCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGA 9603 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| || || ||| || | ||| || || Sbjct 9602 GGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCGGAGCTCTCG 9543 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| ||||| || || || | ||||| | || || ||||| Sbjct 9542 ACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCAT 9493 >seq4867 Length=12713 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||| | | || || || | ||| | |||||| || || || ||||| Sbjct 7580 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAA 7639 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | |||||| ||||||||||| | |||||||||||| |||||| Sbjct 7640 AGCGTTCGACCATCCTCTAGTTGTTTCCCAGCAAAGATGAGTCTCTGTTGATCTGGTGGT 7699 Query 192430 ATTCCTTCTTTATCTTGT 192447 || || ||||| || ||| Sbjct 7700 ATCCCCTCTTTGTCCTGT 7717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983663493208200