Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq10009 100 8e-16
seq9776 89.7 2e-12
seq412 89.7 2e-12
>seq10009
Length=7389
Score = 100 bits (110), Expect = 8e-16
Identities = 273/409 (67%), Gaps = 12/409 (3%)
Strand=Plus/Plus
Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997
|||| || ||||| |||||||| || || || || || || | ||| || ||| ||
Sbjct 5955 TAAACCCGTCCATCTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCAC 6014
Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057
||| | || ||| || ||| || || | |||||||||||||| || |||||||| |
Sbjct 6015 CTCCTAAA----CCGGTTC-CTC-TTATTCTCCCAACAGCATCAATCTCATCAATGAACA 6068
Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117
| ||| || ||||| | || | | || || ||||| || | ||||| || |
Sbjct 6069 CTAAACAGGGTGAATTAGCCTTTGCCTTGTCGAACAAGTCTCTAACCCTAGATGCCCCTA 6128
Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177
||||||| |||| |||| || || || | || | | | || | || ||||
Sbjct 6129 CACCAACAAACATCTCTATGAACTCCGAGCCAGACAATGAGAAAAACGGAACTCCGGCTT 6188
Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237
| || |||| ||| | |||| || ||||| |||||||| || |||||| | | |
Sbjct 6189 CTCCGGCTATGGCCTTGGCCAAGAGAGTCTTCCCTGTTCCTGGCGGTCCCGTCAGCAAGA 6248
Query 289238 CTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAAATTC 289295
| || ||| | | ||| || |||| || || | ||||||| || | || || |||||
Sbjct 6249 CACCTTTTTGGATTTTAGCACCCA--AGGCTGAGAATTTCTCGGGTGTTTTCAAGAATTC 6306
Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATC 289343
|| || || |||| || | || || || || ||| ||||| || ||
Sbjct 6307 AACGATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACA-CCTGCAACGTC 6354
>seq9776
Length=7541
Score = 89.7 bits (98), Expect = 2e-12
Identities = 117/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
||| || || ||||| | | ||||||||| || || || |||||| ||| | ||
Sbjct 1306 GGCAATGAGCCCACAGGTTTCACACACATGCACCCTATAGGCATCACTCTGATCAAACAG 1365
Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522
|| |||| |||| | ||||| |||| |||||| || |||||||||||||| ||
Sbjct 1366 CCTCTCCTTCAAGAAGTTTGCAGCACCATGTGCAATCATGCAGTCACGCTCCATTTCTCC 1425
Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564
|| || ||||||||||| |||| || || || || |||||
Sbjct 1426 AAATCGCAGACCACCATCCCGAGACCGCCCTTCAGCTGGCTG 1467
>seq412
Length=35947
Score = 89.7 bits (98), Expect = 2e-12
Identities = 273/415 (66%), Gaps = 24/415 (6%)
Strand=Plus/Plus
Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997
|||| || ||||| |||||||| || || || || || || | ||| || || ||
Sbjct 17988 TAAACCCGTCCATTTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTCCCAC 18047
Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAA 289055
||| | || ||| | ||||||| || |||||||||||||| || ||||||||
Sbjct 18048 CTCCTAAA----CCG----GTTCCTTTTATTCTCCCAACAGCATCAATCTCATCAATGAA 18099
Query 289056 AATCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGAT 289110
| | ||| || || | |||| || | ||| || || ||||| || | |||
Sbjct 18100 CACTAAACAGGGTGAGTTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGAT 18154
Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170
|| || | ||||||| |||| |||| || || || | || | | | || | ||
Sbjct 18155 GCCCCTACACCAACAAACATCTCTATGAACTCCGAGCCAGACAATGAGAAAAACGGAACT 18214
Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230
||||| || |||| ||| | |||| || ||||| |||||||| || ||||||
Sbjct 18215 CCGGCTTCTCCAGCTATGGCCTTGGCCAAGAGAGTCTTCCCTGTTCCTGGCGGTCCCGTC 18274
Query 289231 AATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTA 289288
| | || || ||| | | ||| || |||| || || | ||||||| || | || |
Sbjct 18275 AGCAAGACACCTTTTTGGATTTTAGCACCCA--AGGCTGAGAATTTCTCGGGTGTTTTCA 18332
Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343
| ||||| || || || |||| || | || || || || |||||| || ||
Sbjct 18333 AGAATTCAACGATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCAACGTC 18387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1470596905758684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |