Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10009 100 8e-16 seq9776 89.7 2e-12 seq412 89.7 2e-12 >seq10009 Length=7389 Score = 100 bits (110), Expect = 8e-16 Identities = 273/409 (67%), Gaps = 12/409 (3%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || || || || || | ||| || ||| || Sbjct 5955 TAAACCCGTCCATCTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCAC 6014 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| || ||| || || | |||||||||||||| || |||||||| | Sbjct 6015 CTCCTAAA----CCGGTTC-CTC-TTATTCTCCCAACAGCATCAATCTCATCAATGAACA 6068 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | ||| || ||||| | || | | || || ||||| || | ||||| || | Sbjct 6069 CTAAACAGGGTGAATTAGCCTTTGCCTTGTCGAACAAGTCTCTAACCCTAGATGCCCCTA 6128 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 ||||||| |||| |||| || || || | || | | | || | || |||| Sbjct 6129 CACCAACAAACATCTCTATGAACTCCGAGCCAGACAATGAGAAAAACGGAACTCCGGCTT 6188 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || |||| ||| | |||| || ||||| |||||||| || |||||| | | | Sbjct 6189 CTCCGGCTATGGCCTTGGCCAAGAGAGTCTTCCCTGTTCCTGGCGGTCCCGTCAGCAAGA 6248 Query 289238 CTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAAATTC 289295 | || ||| | | ||| || |||| || || | ||||||| || | || || ||||| Sbjct 6249 CACCTTTTTGGATTTTAGCACCCA--AGGCTGAGAATTTCTCGGGTGTTTTCAAGAATTC 6306 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATC 289343 || || || |||| || | || || || || ||| ||||| || || Sbjct 6307 AACGATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACA-CCTGCAACGTC 6354 >seq9776 Length=7541 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || ||||| | | ||||||||| || || || |||||| ||| | || Sbjct 1306 GGCAATGAGCCCACAGGTTTCACACACATGCACCCTATAGGCATCACTCTGATCAAACAG 1365 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || |||| |||| | ||||| |||| |||||| || |||||||||||||| || Sbjct 1366 CCTCTCCTTCAAGAAGTTTGCAGCACCATGTGCAATCATGCAGTCACGCTCCATTTCTCC 1425 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 || || ||||||||||| |||| || || || || ||||| Sbjct 1426 AAATCGCAGACCACCATCCCGAGACCGCCCTTCAGCTGGCTG 1467 >seq412 Length=35947 Score = 89.7 bits (98), Expect = 2e-12 Identities = 273/415 (66%), Gaps = 24/415 (6%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || || || || || | ||| || || || Sbjct 17988 TAAACCCGTCCATTTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTCCCAC 18047 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAA 289055 ||| | || ||| | ||||||| || |||||||||||||| || |||||||| Sbjct 18048 CTCCTAAA----CCG----GTTCCTTTTATTCTCCCAACAGCATCAATCTCATCAATGAA 18099 Query 289056 AATCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGAT 289110 | | ||| || || | |||| || | ||| || || ||||| || | ||| Sbjct 18100 CACTAAACAGGGTGAGTTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGAT 18154 Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170 || || | ||||||| |||| |||| || || || | || | | | || | || Sbjct 18155 GCCCCTACACCAACAAACATCTCTATGAACTCCGAGCCAGACAATGAGAAAAACGGAACT 18214 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 ||||| || |||| ||| | |||| || ||||| |||||||| || |||||| Sbjct 18215 CCGGCTTCTCCAGCTATGGCCTTGGCCAAGAGAGTCTTCCCTGTTCCTGGCGGTCCCGTC 18274 Query 289231 AATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTA 289288 | | || || ||| | | ||| || |||| || || | ||||||| || | || | Sbjct 18275 AGCAAGACACCTTTTTGGATTTTAGCACCCA--AGGCTGAGAATTTCTCGGGTGTTTTCA 18332 Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | ||||| || || || |||| || | || || || || |||||| || || Sbjct 18333 AGAATTCAACGATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCAACGTC 18387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470596905758684