Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 506 2e-138
seq43812 381 6e-101
seq18917 214 2e-50
seq12239 161 1e-34
seq49459 82.4 8e-11
>seq6139
Length=10899
Score = 506 bits (560), Expect = 2e-138
Identities = 718/1007 (71%), Gaps = 2/1007 (0%)
Strand=Plus/Plus
Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365
||||||||| | | || ||||| |||||||| || |||||||| ||| | || ||
Sbjct 5088 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 5147
Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425
|| ||| ||| | || | || |||||| | || || ||| | ||||| || |||
Sbjct 5148 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5207
Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485
|| || || || | |||||||||||| | || ||| || ||| | || || || ||
Sbjct 5208 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 5267
Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545
|| || |||||| | | | | |||||| | | |||| ||||||||||| | ||
Sbjct 5268 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 5327
Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605
|| |||| || ||||| ||| | || || | ||| |||||| || |||||||||
Sbjct 5328 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGT 5387
Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTAT 159664
|| ||||| |||| ||||| ||| | ||||| |||||||| || || ||| | | |
Sbjct 5388 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 5446
Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724
|| ||||| ||||| || || ||||||||||| |||||||||||||| ||||| ||
Sbjct 5447 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 5506
Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784
|| || ||| | ||||| || ||||||| || || || ||||| || || || ||
Sbjct 5507 AATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 5566
Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844
||| ||||| | | || | ||||| ||||| || ||||| || || || || |||||
Sbjct 5567 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 5626
Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904
||||||||| |||||| |||| || | || || | | || || ||||| | ||||||
Sbjct 5627 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGT 5686
Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964
||| || || | | ||||||||| || |||||||| || || ||| | ||||
Sbjct 5687 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 5746
Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024
||||| || || ||||| || |||||||| || |||||||| ||||| || ||||| ||
Sbjct 5747 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 5806
Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084
|||| ||||| || || || ||| | |||||||| ||||| ||||| || || | ||
Sbjct 5807 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 5866
Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144
| | |||| || |||| | | || || ||| | || || ||||| || || ||
Sbjct 5867 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 5926
Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 160204
||| || || ||| | ||||| |||||||| ||||||||||| ||||| || |||||
Sbjct 5927 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 5986
Query 160205 CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAA 160264
|| || || |||||||| | || || ||| |||| || ||||| || ||||||||
Sbjct 5987 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 6046
Query 160265 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311
| |||| ||||| || || || | || | || ||||| |||||||
Sbjct 6047 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 6093
>seq43812
Length=736
Score = 381 bits (422), Expect = 6e-101
Identities = 433/578 (75%), Gaps = 2/578 (0%)
Strand=Plus/Plus
Query 157998 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057
|||| ||| | |||| || | |||||||| ||| || |||| ||||||||| || |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 158058 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158117
||||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 158118 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 158177
| || || ||| | ||||| ||||| |||||||| || || || || ||||||||| |
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 158178 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 158236
| | | || ||||| | | | || | ||||| || |||| || || || |
Sbjct 181 GTTCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 239
Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296
|| |||| ||||||||||| ||||| || || ||||| || || || || || || ||
Sbjct 240 GGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 299
Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356
|| || |||||||||||||| ||| |||||||| || ||||| || || |||||| |
Sbjct 300 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 359
Query 158357 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 158416
|| || ||||| || || || || ||||| || || | || | || ||||| |||
Sbjct 360 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 419
Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476
||||| || |||||||| |||||||| || | ||||| |||| || ||||| | ||
Sbjct 420 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 479
Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158536
|| ||||| ||| | | ||||| ||| ||||||||||||||||||||||| |||||
Sbjct 480 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 539
Query 158537 GCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTC 158574
|| ||||||||||| || ||||| ||||||| ||||||
Sbjct 540 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 214 bits (236), Expect = 2e-50
Identities = 295/413 (71%), Gaps = 0/413 (0%)
Strand=Plus/Plus
Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639
||||| | ||| ||||| |||| | ||||| || || | || ||||| || || ||
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 157699
|||||||| || | ||| | ||||| | ||| || |||| ||| | ||||||||
Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312
Query 157700 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 157759
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372
Query 157760 ATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 157819
|| || || ||||| || | || |||| || |||||| | || || ||||| |||
Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432
Query 157820 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTA 157879
|||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | ||
Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492
Query 157880 TTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGT 157939
| ||||| | ||||| | | || ||||| ||||||||||||||| | ||||
Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552
Query 157940 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGC 157992
| |||||||| || ||||| ||| |||||||| ||||| || || || ||
Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605
>seq12239
Length=6102
Score = 161 bits (178), Expect = 1e-34
Identities = 371/551 (67%), Gaps = 12/551 (2%)
Strand=Plus/Minus
Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365
||||||||| | | || ||||| |||||||| || |||||||| ||| | || ||
Sbjct 611 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 552
Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425
|| ||| ||| | || | || |||||| | || || ||| | ||||| || |||
Sbjct 551 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 492
Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGT-GCTAACTTTCTCACAGCAGCTGT 159484
|| | || || | ||||||| |||| | || ||| || |||| | || | || ||
Sbjct 491 TATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGT 433
Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544
|| || |||||| | | | | |||||| | | |||| |||| || ||| | ||
Sbjct 432 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGTGGG-TCATGAAGCACA 374
Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604
|| |||| || ||||| ||| | || | ||| |||||| | |||||| |
Sbjct 373 AGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAG 314
Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCT---CATTG 159660
||| ||||| |||| ||||| ||| | ||||| |||||||| || || ||| || |
Sbjct 313 TGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATT 254
Query 159661 GTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCT 159720
|| | ||||| ||||| || || ||||||||||| ||||||| |||| | | ||
Sbjct 253 GT----GACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCT 198
Query 159721 TCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAG 159780
| || || || || | ||||| || ||||||| || || || ||||| || || |
Sbjct 197 TTCTAATTTATCC-TCAGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGG 139
Query 159781 CAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCC 159840
|| ||| | ||| | | || | |||| ||| | || ||||| || || | | |
Sbjct 138 TTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGAACCATCTAC 79
Query 159841 ATATGATGGGA 159851
|||||||||||
Sbjct 78 ATATGATGGGA 68
>seq49459
Length=611
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 158032 TTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 158091
||| || |||| ||||||||| || |||||||||||||| |||| ||| ||||||||||
Sbjct 488 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 547
Query 158092 AGCAGAACACAACAT 158106
|| || ||||||||
Sbjct 548 GGCTGAGCACAACAT 562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547930682854240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |