Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq43812 374 1e-98 seq6139 356 3e-93 seq18917 159 4e-34 seq12239 125 8e-24 seq49459 82.4 9e-11 >seq43812 Length=736 Score = 374 bits (414), Expect = 1e-98 Identities = 430/577 (75%), Gaps = 1/577 (0%) Strand=Plus/Plus Query 72658 TTCCTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 72716 || |||| | || ||| | ||||| || || |||||||||||||| ||||| ||||| Sbjct 5 TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 64 Query 72717 AGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTT 72776 ||||| |||||||| ||| | || ||||| || || |||||||| || |||||||| || Sbjct 65 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 124 Query 72777 CCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 72836 || ||| ||||||||| ||| | ||||| || || || ||||| ||||| ||||| Sbjct 125 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 184 Query 72837 ACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTA 72896 | || ||||| | | ||||| || || ||||| || || | || | || || Sbjct 185 TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTA 244 Query 72897 TAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAG 72956 | ||||| |||||||||||||| || |||||||| |||||||| || || || || | Sbjct 245 CAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCG 304 Query 72957 ATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGT 73016 ||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | || | Sbjct 305 ATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 364 Query 73017 ATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCT 73076 | || ||||| || | ||||| || | | ||||| |||| ||||| |||||||| Sbjct 365 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 424 Query 73077 TAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATG 73136 || || ||||| |||||||||||||| || ||| | ||| || | || || Sbjct 425 AAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTG 484 Query 73137 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 73196 || ||| || ||||| | || |||||||| |||||||||||||||||| | ||||| || Sbjct 485 GGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 544 Query 73197 CAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 73233 ||||||||| ||||||||||| ||| ||||||| || Sbjct 545 CAACTTCCCTCTAGACCTAGCTGCTGTTGAGTCTCCA 581 >seq6139 Length=10899 Score = 356 bits (394), Expect = 3e-93 Identities = 708/1049 (67%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 5065 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 5124 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | ||||||||||| || || || |||||||| || | || | || ||||||||| || Sbjct 5125 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAG 5184 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 5185 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 5244 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 ||||||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 5245 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 5304 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | || ||||| || || |||||||||||| || || |||| ||||||||| || || | Sbjct 5305 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 5364 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 5365 GGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 5424 Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772 | |||| || |||| | || ||||| || ||| | || || || | || | Sbjct 5425 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 5484 Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832 | || || |||||||||| ||||| |||| || |||||||||| || | Sbjct 5485 CTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGC 5544 Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 73892 || || ||||| || || || ||||| | || | || | || || || || ||| Sbjct 5545 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 5604 Query 73893 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 73952 || | || ||||||||||||||||| || || ||| |||| || | || | ||| Sbjct 5605 GGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTAT 5664 Query 73953 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 74012 | || || |||||||| || ||| | || || || | |||||| || Sbjct 5665 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 5709 Query 74013 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTT 74072 | | | | ||| |||| ||| | || || | || || || | ||||| |||| Sbjct 5710 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 5763 Query 74073 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 74132 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 5764 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 5823 Query 74133 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 74192 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 5824 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTC 5883 Query 74193 TAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 74252 | || | || |||||||| | ||||| | || || ||||| || || || || || Sbjct 5884 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 5943 Query 74253 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 74312 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 5944 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 6003 Query 74313 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 74372 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 6004 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 6063 Query 74373 AAGTCTTGCCACGAGGCAACGCACTATAA 74401 | || | ||||| || ||||| || ||| Sbjct 6064 AGGTTCTACCACGTGGAAACGCTCTTTAA 6092 >seq18917 Length=3610 Score = 159 bits (176), Expect = 4e-34 Identities = 288/415 (69%), Gaps = 7/415 (2%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| || || || || | ||| |||| ||||||||||| || Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 ||||| || | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 3253 ATGATTCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 3311 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 72412 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 3312 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 3370 Query 72413 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 72472 | || || || ||||| | |||| |||| || || || || || || ||||| | Sbjct 3371 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGA 3430 Query 72473 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTA 72532 |||||||||| || | | || || ||| | || ||||| |||||||| | || || Sbjct 3431 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 3490 Query 72533 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 3491 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 3550 Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 72647 | || || ||| | |||||||| ||| ||||| ||||| ||||| |||||| Sbjct 3551 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 3602 >seq12239 Length=6102 Score = 125 bits (138), Expect = 8e-24 Identities = 330/499 (66%), Gaps = 6/499 (1%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || ||||||| |||||| ||| || || ||||| || | || ||||||||| Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| | ||||| | || | ||| | || || | | ||||| Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTTTA 444 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || | ||||| || || |||| | || | | | ||| | | || || || | ||| Sbjct 443 ACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGGT 385 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 | || |||||||||||| || || |||| ||||||| || || ||| ||||| Sbjct 384 CATGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTT 325 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 | | || | | || | | | |||||||| ||| | | || ||||| |||| || Sbjct 324 TCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 265 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCA-- 73781 |||| | | ||||| || ||| | || || || | || || | || | Sbjct 264 TCTGTTCAATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATT 205 Query 73782 CGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCG 73841 | || ||||||||| ||||| | ||| || | |||||||||| |||||| || | Sbjct 204 CCTGC--CTTTCTAATTTATCC-TCAGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTG 148 Query 73842 GTGTCGCAGCAATCTTTCG 73860 |||| || | || ||||| Sbjct 147 GTGTAGCGGTTATATTTCG 129 >seq49459 Length=611 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || |||||||||||||| ||||| ||||| ||||| |||||||| ||| | || ||||| Sbjct 489 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 548 Query 72748 GCAGAACACAACATA 72762 || || ||||||||| Sbjct 549 GCTGAGCACAACATA 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572410059326560