Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 244 1e-58
seq549 221 1e-51
>seq12321
Length=6064
Score = 244 bits (270), Expect = 1e-58
Identities = 232/295 (79%), Gaps = 1/295 (0%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||||||||||||||||| ||||| | | |||| | || |||
Sbjct 1087 GAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACCTGG 1028
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||||||| ||| || |||||| ||||| |||||| |||||||||
Sbjct 1027 ACGTCGGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAG 968
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| ||||||||||| ||||| |||||||||||| ||||| |||| | |||||| |
Sbjct 967 AAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGT 908
Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872
|||||| || |||||| || |||||||||||||||| ||||| |||||||| ||||||
Sbjct 907 GTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTAC 848
Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926
|||||||| | || |||| |||| ||||| | | || | || ||||||||
Sbjct 847 ATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCTGGGGTTG 793
Score = 152 bits (168), Expect = 6e-31
Identities = 185/251 (74%), Gaps = 6/251 (2%)
Strand=Plus/Minus
Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260
|||||| |||| || || |||||||| || |||||||||||||| ||||| | ||||
Sbjct 1345 TCGTTGGAGAAGGTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAG 1286
Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320
|| || || ||||| ||||| || |||||| ||| ||| ||| || || ||| || ||
Sbjct 1285 AAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAA 1226
Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGAC 869380
|| | ||| || || |||||||||||| ||||| | |||||| ||| || |
Sbjct 1225 GTCT-GAGATCC-----GTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAG 1172
Query 869381 GGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTG 869440
|| | || |||||||| || |||||||||||| | || ||| |||| ||||||
Sbjct 1171 GGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTG 1112
Query 869441 TCGATCAGGAG 869451
|||| ||||||
Sbjct 1111 TCGAGCAGGAG 1101
Score = 100 bits (110), Expect = 3e-15
Identities = 215/319 (67%), Gaps = 2/319 (1%)
Strand=Plus/Minus
Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749
|||||| ||| || || || | | ||| || ||||||||||| |||| ||||||||
Sbjct 1682 CGCCTTCTGGTAATCACCAACCCTCTTCTCAAAGAAGTTGGTCTTCCCCTGAAGCGAGAT 1623
Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809
|||||||||||| ||||| || | | ||| ||| || | || |||| |
Sbjct 1622 CAACTCCATCCAATCAAACGGATTCGCCACACCGTACACCTTCCCGTACCCAAGCGCGCC 1563
Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869
| || | || || ||||||||||| ||||| | ||| || | ||||| || |
Sbjct 1562 CAAAAGCCTATCCGCCACAAACTCGATATACTGACTCATCAGATCACGATTCATCCCCAC 1503
Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929
| ||| ||| |||| |||| ||||||||| |||||||||| || || ||| |
Sbjct 1502 CAACGCGCACGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACAC 1443
Query 868930 GATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988
|||| | || | || || ||| | |||| | | | || |||| ||||||||
Sbjct 1442 GATC-GACTTCACGCGCTCCTCCGGGAGCTTCGTCCTCAATAAGGTATAGATCAGGCAGG 1384
Query 868989 CAAAGTCGCAGTGCAACCC 869007
| || |||||||| | |||
Sbjct 1383 CGAAATCGCAGTGAAGCCC 1365
>seq549
Length=32968
Score = 221 bits (244), Expect = 1e-51
Identities = 229/298 (77%), Gaps = 4/298 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||||||||||||||| ||||||||||||||||| ||||| | |||| | || |||
Sbjct 20039 GAGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGG 19980
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||| ||| ||| || |||||| ||||| |||||| |||||||||
Sbjct 19979 ACGTCGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAG 19920
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809
|| || |||||||| |||| ||||| |||||| ||||| |||| | |||||| |
Sbjct 19919 AAGGCGAGGACGTGTTTGACGAAGTGTCGCTCGCCGTCGTTGAGGTTTTGCTCCCAGTCG 19860
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
|||||| | |||||| || |||||||||||||||| ||||| ||||| || |||
Sbjct 19859 CGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTG 19800
Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926
||||||||||| | ||| ||||| |||| ||||| | | || |||| ||||||||
Sbjct 19799 TACATCTCCCAGATCTGCGGGTAGTGGATCGGGAACATGCAGAATCGGTCTGGGGTTG 19742
Score = 149 bits (164), Expect = 8e-30
Identities = 197/272 (72%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|||||||| | ||||| |||||| |||| ||| || |||||||| || ||||||
Sbjct 20318 CCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCCACGCTTC 20259
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|| ||||| ||||| | |||||| ||||||||||| ||||| || || ||| || ||
Sbjct 20258 TTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCAAGCGAAC 20199
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359
| | || || |||||| |||| | ||||||| | ||||||||||| |||||
Sbjct 20198 GCCACGATCCTCTCGGCGAAGGCCT-GAGGCCC-----ATCGATCCACTTCAAGGCCCAT 20145
Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419
| |||||||||| | || | || | ||| ||||| ||||| ||||| |||||| | ||
Sbjct 20144 TGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTCC 20085
Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451
||| |||| || ||||| | |||||
Sbjct 20084 TTGTTGTCTTTGATGTAAGTGTCTAAGAGGAG 20053
Score = 98.7 bits (108), Expect = 1e-14
Identities = 211/314 (67%), Gaps = 6/314 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || | | |||||| || || || || |||| |||||||||
Sbjct 20633 GCCTTCTGGTAATCACCAACCCTCTTCTCGAAGAAATTCGTTTTACCCTGAAGCGAGATC 20574
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
||||||||||| || || || | | ||| ||| |||| ||||||| | |
Sbjct 20573 AACTCCATCCAATCAAAAGGATTCGCCACACCGTACACCTTCCCGCACCCGAGCGCCCCC 20514
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
| || | || || || ||||| || ||||| | ||| | | |||||| || |
Sbjct 20513 AAAAGCCTATCCGCCACGAACTCAATATACTGACTCATCAACTCCCGGTTCATCCCCACC 20454
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
| ||| ||| |||| |||| ||||||||| |||||||||| || || ||| | |
Sbjct 20453 AACGCGCACGGGAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACG 20394
Query 868931 ATCTGCCTGGGCACG---TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987
||| ||| |||| || ||||| |||| | || | | ||||| ||||||
Sbjct 20393 ATCGACCT---CACGCGCTCCTCCGAGAGCTTCGTCCTAAGGAGGGAGTAGATCAGGCAC 20337
Query 868988 GCAAAGTCGCAGTG 869001
|| |||||||||||
Sbjct 20336 GCGAAGTCGCAGTG 20323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6101826988940044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |