Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12321 244 1e-58 seq549 221 1e-51 >seq12321 Length=6064 Score = 244 bits (270), Expect = 1e-58 Identities = 232/295 (79%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||||| ||||| | | |||| | || ||| Sbjct 1087 GAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACCTGG 1028 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||| || |||||| ||||| |||||| ||||||||| Sbjct 1027 ACGTCGGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAG 968 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || ||||||||||| ||||| |||||||||||| ||||| |||| | |||||| | Sbjct 967 AAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGT 908 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||||| || |||||| || |||||||||||||||| ||||| |||||||| |||||| Sbjct 907 GTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTAC 848 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 |||||||| | || |||| |||| ||||| | | || | || |||||||| Sbjct 847 ATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCTGGGGTTG 793 Score = 152 bits (168), Expect = 6e-31 Identities = 185/251 (74%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| || || |||||||| || |||||||||||||| ||||| | |||| Sbjct 1345 TCGTTGGAGAAGGTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAG 1286 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 || || || ||||| ||||| || |||||| ||| ||| ||| || || ||| || || Sbjct 1285 AAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAA 1226 Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGAC 869380 || | ||| || || |||||||||||| ||||| | |||||| ||| || | Sbjct 1225 GTCT-GAGATCC-----GTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAG 1172 Query 869381 GGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTG 869440 || | || |||||||| || |||||||||||| | || ||| |||| |||||| Sbjct 1171 GGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTG 1112 Query 869441 TCGATCAGGAG 869451 |||| |||||| Sbjct 1111 TCGAGCAGGAG 1101 Score = 100 bits (110), Expect = 3e-15 Identities = 215/319 (67%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || || | | ||| || ||||||||||| |||| |||||||| Sbjct 1682 CGCCTTCTGGTAATCACCAACCCTCTTCTCAAAGAAGTTGGTCTTCCCCTGAAGCGAGAT 1623 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||||||||| ||||| || | | ||| ||| || | || |||| | Sbjct 1622 CAACTCCATCCAATCAAACGGATTCGCCACACCGTACACCTTCCCGTACCCAAGCGCGCC 1563 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 | || | || || ||||||||||| ||||| | ||| || | ||||| || | Sbjct 1562 CAAAAGCCTATCCGCCACAAACTCGATATACTGACTCATCAGATCACGATTCATCCCCAC 1503 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 | ||| ||| |||| |||| ||||||||| |||||||||| || || ||| | Sbjct 1502 CAACGCGCACGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACAC 1443 Query 868930 GATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 |||| | || | || || ||| | |||| | | | || |||| |||||||| Sbjct 1442 GATC-GACTTCACGCGCTCCTCCGGGAGCTTCGTCCTCAATAAGGTATAGATCAGGCAGG 1384 Query 868989 CAAAGTCGCAGTGCAACCC 869007 | || |||||||| | ||| Sbjct 1383 CGAAATCGCAGTGAAGCCC 1365 >seq549 Length=32968 Score = 221 bits (244), Expect = 1e-51 Identities = 229/298 (77%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| ||||||||||||||||| ||||| | |||| | || ||| Sbjct 20039 GAGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGG 19980 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| ||| || |||||| ||||| |||||| ||||||||| Sbjct 19979 ACGTCGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAG 19920 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 || || |||||||| |||| ||||| |||||| ||||| |||| | |||||| | Sbjct 19919 AAGGCGAGGACGTGTTTGACGAAGTGTCGCTCGCCGTCGTTGAGGTTTTGCTCCCAGTCG 19860 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 |||||| | |||||| || |||||||||||||||| ||||| ||||| || ||| Sbjct 19859 CGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTG 19800 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 ||||||||||| | ||| ||||| |||| ||||| | | || |||| |||||||| Sbjct 19799 TACATCTCCCAGATCTGCGGGTAGTGGATCGGGAACATGCAGAATCGGTCTGGGGTTG 19742 Score = 149 bits (164), Expect = 8e-30 Identities = 197/272 (72%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| | ||||| |||||| |||| ||| || |||||||| || |||||| Sbjct 20318 CCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCCACGCTTC 20259 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||| | |||||| ||||||||||| ||||| || || ||| || || Sbjct 20258 TTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCAAGCGAAC 20199 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || || |||||| |||| | ||||||| | ||||||||||| ||||| Sbjct 20198 GCCACGATCCTCTCGGCGAAGGCCT-GAGGCCC-----ATCGATCCACTTCAAGGCCCAT 20145 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | |||||||||| | || | || | ||| ||||| ||||| ||||| |||||| | || Sbjct 20144 TGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTCC 20085 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 ||| |||| || ||||| | ||||| Sbjct 20084 TTGTTGTCTTTGATGTAAGTGTCTAAGAGGAG 20053 Score = 98.7 bits (108), Expect = 1e-14 Identities = 211/314 (67%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| || || || || |||| ||||||||| Sbjct 20633 GCCTTCTGGTAATCACCAACCCTCTTCTCGAAGAAATTCGTTTTACCCTGAAGCGAGATC 20574 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||||||||| || || || | | ||| ||| |||| ||||||| | | Sbjct 20573 AACTCCATCCAATCAAAAGGATTCGCCACACCGTACACCTTCCCGCACCCGAGCGCCCCC 20514 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | || || || ||||| || ||||| | ||| | | |||||| || | Sbjct 20513 AAAAGCCTATCCGCCACGAACTCAATATACTGACTCATCAACTCCCGGTTCATCCCCACC 20454 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | ||| ||| |||| |||| ||||||||| |||||||||| || || ||| | | Sbjct 20453 AACGCGCACGGGAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACG 20394 Query 868931 ATCTGCCTGGGCACG---TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 ||| ||| |||| || ||||| |||| | || | | ||||| |||||| Sbjct 20393 ATCGACCT---CACGCGCTCCTCCGAGAGCTTCGTCCTAAGGAGGGAGTAGATCAGGCAC 20337 Query 868988 GCAAAGTCGCAGTG 869001 || ||||||||||| Sbjct 20336 GCGAAGTCGCAGTG 20323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101826988940044