Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq11485 104 2e-17 seq25552 82.4 6e-11 >seq11485 Length=6519 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG---CCT 110329 ||||| || || ||||| || | ||||| |||||||||||| | ||| |||| || Sbjct 4934 ATGCAGATTTTCGTCAAGACACTCACCGGTAAAACCATTACCCTTGAAGTGGAGAGCTCT 4993 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||||| ||||| |||||| | || ||| Sbjct 4994 GAC---ACGATCGACAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCGGAC 5050 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||||| || | || || |||||||| ||||||| | || |||| |||||| Sbjct 5051 CAGCAGAGACTCATCTTCGCTGGGAAACAGCTCGAGGATGGTCGGACTTTGGCTGATTAC 5110 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || || || ||||| | ||| |||| Sbjct 5111 AACATCCAGAAGGAGTCTACTCTTCACTTGGT 5142 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||||| || ||||| ||||| || | || ||| | Sbjct 4706 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAGACCATCACTTTGGAGGTTGAGAGCTCC 4765 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || ||| ||||| ||||| ||||| | || ||| || Sbjct 4766 GACACTATTGACAATGTGAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 4825 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | || ||||||||||| ||||||| | || | ||||||||||| Sbjct 4826 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGACGCACGCTTGCGGATTACAAT 4885 Query 110453 ATTCAAAAAGAATCTACG 110470 ||||| || || |||||| Sbjct 4886 ATTCAGAAGGAGTCTACG 4903 >seq25552 Length=2169 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| |||| ||||| ||||| || ||||| ||| | | Sbjct 245 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAAGTCGAGTCCTCC 304 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || ||| ||||| ||||||||||| | || |||||| Sbjct 305 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGATCAG 364 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || ||||||||||| || |||| | | || |||| || |||||| Sbjct 365 CAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTACAAC 424 Query 110453 ATTCAAAAAG 110462 || || |||| Sbjct 425 ATCCAGAAAG 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412515900488876