Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq12321 197 2e-44 seq549 194 3e-43 seq2901 102 1e-15 >seq12321 Length=6064 Score = 197 bits (218), Expect = 2e-44 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||| || |||||| ||| ||| || ||||| ||||| ||| Sbjct 1042 GCCTCGGAGACCTGGACGTCGGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCG 983 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| ||||| |||||||| ||||| ||||| |||||| ||||| |||| Sbjct 982 TCGGAGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGA 923 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | |||||| || ||||||||| |||||||||||||| |||||||| Sbjct 922 TTCTCCCAGTCGCGTGTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCT 863 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| |||||||||||||| ||| || |||| |||| ||||||| Sbjct 862 TCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACA 814 Score = 196 bits (216), Expect = 8e-44 Identities = 217/288 (75%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || |||||||| || |||||||||||||| ||||| | ||||| || || ||||| Sbjct 1330 AGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAG 1271 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 ||||| || |||||| ||| ||| |||||| || ||| || ||||| | || || Sbjct 1270 AAGATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTG-AGATCC--- 1215 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 || |||||||||||| ||||| | ||||| ||| || |||| | || |||||| Sbjct 1214 --GTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATG 1157 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 || || |||||||||||| |||| ||| |||| ||||||||||| ||||| Sbjct 1156 GCCCGGAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTA 1097 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 || |||||||||||||||| || || |||||||||||||| || ||| Sbjct 1096 TACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAG 1049 Score = 86.0 bits (94), Expect = 1e-10 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 ||| || ||||||||||| |||| |||||||||||||||||||| ||||| || || Sbjct 1655 CTCAAAGAAGTTGGTCTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGATTCGC 1596 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 | ||| |||| || |||| |||| | | || | || || || || || || Sbjct 1595 CACACCGTACACCTTCCCGTACCCAAGCGCGCCCAAAAGCCTATCCGCCACAAACTCGAT 1536 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103 ||||| | ||| || | ||||| || | | ||| ||| || |||| |||| | Sbjct 1535 ATACTGACTCATCAGATCACGATTCATCCCCACCAACGCGCAC-GGAAGCGCGTCGCACA 1477 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCG 794132 ||||||| |||||||||| || || ||| Sbjct 1476 CAAACTCCCTCTCGATCTCCACCGCGTCG 1448 >seq549 Length=32968 Score = 194 bits (214), Expect = 3e-43 Identities = 238/324 (73%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| | ||||| |||||| ||| ||| || |||||||| || |||||| Sbjct 20318 CCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCCACGCTTC 20259 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| | ||||| ||||||||||| ||||| || || ||| || || Sbjct 20258 TTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCAAGCGAAC 20199 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | |||| || |||||| || | | |||||| | ||||||||||| ||||| Sbjct 20198 GCCACGATCCTCTCGGCGAAGGCCTG-AGGCCCA-----TCGATCCACTTCAAGGCCCAT 20145 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||||||| | || | || | ||| ||||| ||||| ||||| |||||| |||| Sbjct 20144 TGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTCC 20085 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 ||| |||| ||| ||||| | |||||| ||| |||| ||||||||||| ||| Sbjct 20084 TTGTTGTCTTTGATGTAAGTGTCTAAGAGGAGACTGTACATCTCGGAGTGGATGTTCTCG 20025 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 || |||||||||||||| || ||| Sbjct 20024 ATCGCGATCTGGAAGCCGTAGAAG 20001 Score = 176 bits (194), Expect = 7e-38 Identities = 179/233 (77%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || ||||| || |||||| ||| ||| || ||||| ||||| || Sbjct 19995 GGCCTCGGAGACCTGGACGTCGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCC 19936 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||||||||| |||| ||||| |||||| ||||| |||| Sbjct 19935 GTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGACGAAGTGTCGCTCGCCGTCGTTGAG 19876 Query 796269 CGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 |||||| | ||||| | ||||||||| |||||||||||||| ||||| Sbjct 19875 GTTTTGCTCCCAGTCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGA 19816 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| ||||| || |||||||||||||| ||| | ||||| |||| ||||||| Sbjct 19815 GGCTTCGGCTTTCTTGTACATCTCCCAGATCTGCGGGTAGTGGATCGGGAACA 19763 Score = 104 bits (114), Expect = 4e-16 Identities = 205/297 (69%), Gaps = 10/297 (3%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| || || || || |||| |||||||||||||||||||| || || || || Sbjct 20607 CTCGAAGAAATTCGTTTTACCCTGAAGCGAGATCAACTCCATCCAATCAAAAGGATTCGC 20548 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 | ||| |||| |||||||||||| | | | || | || || ||||| ||||| Sbjct 20547 CACACCGTACACCTTCCCGCACCCGAGCGCCCCCAAAAGCCTATCCGCCACGAACTCAAT 20488 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103 ||||| | ||| | | |||||| || | | ||| |||||| |||| |||| | Sbjct 20487 ATACTGACTCATCAACTCCCGGTTCATCCCCACCAACGCGCACGGG-AGCGCGTCGCACA 20429 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG---TCGGACG 794160 ||||||| |||||||||| || || ||| | |||| ||| |||| || || Sbjct 20428 CAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCT---CACGCGCTCCTCCG 20372 Query 794161 ACGGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 | |||| ||| || | | ||||| |||||| || |||||||| || || ||| Sbjct 20371 AGAGCTTCGTC-CTAAGGAGGGAGTAGATCAGGCACGCGAAGTCGCAGTGGAGGCCT 20316 >seq2901 Length=17037 Score = 102 bits (112), Expect = 1e-15 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| ||||||||||| ||||| ||||| ||||| | |||| || || | | | Sbjct 8991 ACTTGGTAACGGCCTTGGTTCCCTCCGAGACAGCGTGTTTCGCCAACTCTCCAGGAAGCA 8932 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | ||| |||||||| ||||| | || ||| ||| |||||| | || Sbjct 8931 CAAGCCTCACCGCGGTCTGAATCTCCCTGGAAGTGATGGTGGGCTTCTTGTTGTACCTCG 8872 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 |||| ||||||| | ||| |||| || ||||||| || |||||||| Sbjct 8871 CCAGCTTCGAGGCCTCGCCGGCGAGCTTCTCGAAGATATCGTTGATGAAGCTGTTCATGA 8812 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| ||||||| || | ||||||||| |||||||| || |||||| Sbjct 8811 TCCCCATGGCCTTGCTGGAGATTCCGATGTCGGGGTGAACCTGCTTCAGGACCTTG 8756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909360561917348