Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 197 2e-44
seq549 194 3e-43
seq2901 102 1e-15
>seq12321
Length=6064
Score = 197 bits (218), Expect = 2e-44
Identities = 181/229 (79%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||||| || ||||| || |||||| ||| ||| || ||||| ||||| |||
Sbjct 1042 GCCTCGGAGACCTGGACGTCGGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCG 983
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
||| ||||||||| ||||| |||||||| ||||| ||||| |||||| ||||| ||||
Sbjct 982 TCGGAGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGA 923
Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329
|||||| | |||||| || ||||||||| |||||||||||||| ||||||||
Sbjct 922 TTCTCCCAGTCGCGTGTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCT 863
Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
|||||||| |||||||||||||| ||| || |||| |||| |||||||
Sbjct 862 TCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACA 814
Score = 196 bits (216), Expect = 8e-44
Identities = 217/288 (75%), Gaps = 6/288 (2%)
Strand=Plus/Minus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| || |||||||| || |||||||||||||| ||||| | ||||| || || |||||
Sbjct 1330 AGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAG 1271
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496
||||| || |||||| ||| ||| |||||| || ||| || ||||| | || ||
Sbjct 1270 AAGATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTG-AGATCC--- 1215
Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556
|| |||||||||||| ||||| | ||||| ||| || |||| | || ||||||
Sbjct 1214 --GTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATG 1157
Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616
|| || |||||||||||| |||| ||| |||| ||||||||||| |||||
Sbjct 1156 GCCCGGAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTA 1097
Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664
|| |||||||||||||||| || || |||||||||||||| || |||
Sbjct 1096 TACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAG 1049
Score = 86.0 bits (94), Expect = 1e-10
Identities = 146/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984
||| || ||||||||||| |||| |||||||||||||||||||| ||||| || ||
Sbjct 1655 CTCAAAGAAGTTGGTCTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGATTCGC 1596
Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044
| ||| |||| || |||| |||| | | || | || || || || || ||
Sbjct 1595 CACACCGTACACCTTCCCGTACCCAAGCGCGCCCAAAAGCCTATCCGCCACAAACTCGAT 1536
Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103
||||| | ||| || | ||||| || | | ||| ||| || |||| |||| |
Sbjct 1535 ATACTGACTCATCAGATCACGATTCATCCCCACCAACGCGCAC-GGAAGCGCGTCGCACA 1477
Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCG 794132
||||||| |||||||||| || || |||
Sbjct 1476 CAAACTCCCTCTCGATCTCCACCGCGTCG 1448
>seq549
Length=32968
Score = 194 bits (214), Expect = 3e-43
Identities = 238/324 (73%), Gaps = 6/324 (2%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|||||||| | ||||| |||||| ||| ||| || |||||||| || ||||||
Sbjct 20318 CCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCCACGCTTC 20259
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| ||||| ||||| | ||||| ||||||||||| ||||| || || ||| || ||
Sbjct 20258 TTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCAAGCGAAC 20199
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
| |||| || |||||| || | | |||||| | ||||||||||| |||||
Sbjct 20198 GCCACGATCCTCTCGGCGAAGGCCTG-AGGCCCA-----TCGATCCACTTCAAGGCCCAT 20145
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
| ||||||||| | || | || | ||| ||||| ||||| ||||| |||||| ||||
Sbjct 20144 TGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTCC 20085
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
||| |||| ||| ||||| | |||||| ||| |||| ||||||||||| |||
Sbjct 20084 TTGTTGTCTTTGATGTAAGTGTCTAAGAGGAGACTGTACATCTCGGAGTGGATGTTCTCG 20025
Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664
|| |||||||||||||| || |||
Sbjct 20024 ATCGCGATCTGGAAGCCGTAGAAG 20001
Score = 176 bits (194), Expect = 7e-38
Identities = 179/233 (77%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208
|||||||| || ||||| || |||||| ||| ||| || ||||| ||||| ||
Sbjct 19995 GGCCTCGGAGACCTGGACGTCGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCC 19936
Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268
|||| ||||||||| |||||||||||||| |||| ||||| |||||| ||||| ||||
Sbjct 19935 GTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGACGAAGTGTCGCTCGCCGTCGTTGAG 19876
Query 796269 CGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325
|||||| | ||||| | ||||||||| |||||||||||||| |||||
Sbjct 19875 GTTTTGCTCCCAGTCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGA 19816
Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
||| ||||| || |||||||||||||| ||| | ||||| |||| |||||||
Sbjct 19815 GGCTTCGGCTTTCTTGTACATCTCCCAGATCTGCGGGTAGTGGATCGGGAACA 19763
Score = 104 bits (114), Expect = 4e-16
Identities = 205/297 (69%), Gaps = 10/297 (3%)
Strand=Plus/Minus
Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984
|||||| || || || || |||| |||||||||||||||||||| || || || ||
Sbjct 20607 CTCGAAGAAATTCGTTTTACCCTGAAGCGAGATCAACTCCATCCAATCAAAAGGATTCGC 20548
Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044
| ||| |||| |||||||||||| | | | || | || || ||||| |||||
Sbjct 20547 CACACCGTACACCTTCCCGCACCCGAGCGCCCCCAAAAGCCTATCCGCCACGAACTCAAT 20488
Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103
||||| | ||| | | |||||| || | | ||| |||||| |||| |||| |
Sbjct 20487 ATACTGACTCATCAACTCCCGGTTCATCCCCACCAACGCGCACGGG-AGCGCGTCGCACA 20429
Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG---TCGGACG 794160
||||||| |||||||||| || || ||| | |||| ||| |||| || ||
Sbjct 20428 CAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCT---CACGCGCTCCTCCG 20372
Query 794161 ACGGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216
| |||| ||| || | | ||||| |||||| || |||||||| || || |||
Sbjct 20371 AGAGCTTCGTC-CTAAGGAGGGAGTAGATCAGGCACGCGAAGTCGCAGTGGAGGCCT 20316
>seq2901
Length=17037
Score = 102 bits (112), Expect = 1e-15
Identities = 164/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532
||||||| ||||||||||| ||||| ||||| ||||| | |||| || || | | |
Sbjct 8991 ACTTGGTAACGGCCTTGGTTCCCTCCGAGACAGCGTGTTTCGCCAACTCTCCAGGAAGCA 8932
Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592
|| | ||| |||||||| ||||| | || ||| ||| |||||| | ||
Sbjct 8931 CAAGCCTCACCGCGGTCTGAATCTCCCTGGAAGTGATGGTGGGCTTCTTGTTGTACCTCG 8872
Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652
|||| ||||||| | ||| |||| || ||||||| || ||||||||
Sbjct 8871 CCAGCTTCGAGGCCTCGCCGGCGAGCTTCTCGAAGATATCGTTGATGAAGCTGTTCATGA 8812
Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
|| ||| | ||| ||||||| || | ||||||||| |||||||| || ||||||
Sbjct 8811 TCCCCATGGCCTTGCTGGAGATTCCGATGTCGGGGTGAACCTGCTTCAGGACCTTG 8756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7909360561917348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |