Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq11485 104 2e-17 seq37186 102 6e-17 seq20570 102 6e-17 seq7912 100 2e-16 seq24793 91.5 1e-13 seq964 91.5 1e-13 seq12662 89.7 4e-13 seq1703 86.0 5e-12 >seq11485 Length=6519 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| ||||| |||||||| ||||| || | || ||| ||| Sbjct 4706 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAGACCATCACTTTGGAGGTTGAGAGCTC- 4764 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || ||| |||||| || || ||||| | || ||| || Sbjct 4765 CGACACTATTGACAATGTGAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCA 4824 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| || | || ||||||||||| ||||| | || | ||||| ||||| Sbjct 4825 GCAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGACGCACGCTTGCGGATTACAA 4884 Query 107735 CATTCAAAAGGAGTCTACG 107753 ||||| |||||||||||| Sbjct 4885 TATTCAGAAGGAGTCTACG 4903 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| || | || || |||||||||||| | ||| |||| ||| Sbjct 4934 ATGCAGATTTTCGTCAAGACACTCACCGGTAAAACCATTACCCTTGAAGTGGAGAGCT-C 4992 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| |||||| || || |||||| | || ||| || Sbjct 4993 TGACACGATCGACAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCGGACCA 5052 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| || | || || |||||||| ||||| | || |||| || ||||| Sbjct 5053 GCAGAGACTCATCTTCGCTGGGAAACAGCTCGAGGATGGTCGGACTTTGGCTGATTACAA 5112 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||||||||| | ||| |||| Sbjct 5113 CATCCAGAAGGAGTCTACTCTTCACTTGGT 5142 >seq37186 Length=985 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || || ||| | || || || || || ||| |||| ||| ||| Sbjct 666 ATGCAAATCTTCGTTAAGACTCTCACTGGGAAGACGATCACCCTCGAGGTGGAAAGCTC- 608 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| |||||| || ||||| || | || ||||| Sbjct 607 CGACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCA 548 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || |||||| ||||||||| || |||| |||| |||||||| Sbjct 547 GCAGAGGCTTATCTTCGCCGGGAAACAGTTGGAGGACGGCAGAACATTGGCTGACTACAA 488 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||| ||||| || Sbjct 487 CATCCAAAAAGAGTCGAC 470 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || || || || ||||| |||||||| | || |||| ||| Sbjct 209 ATGCAGATTTTCGTTAAGACATTGACCGGCAAGACCATTACTTTGGAGGTGGAGAGCTC- 151 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || ||| ||||| || || || || | || ||| || Sbjct 150 CGACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCA 91 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || ||||| || |||| || |||| ||||||||||||| Sbjct 90 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACAA 31 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 ||| || ||||||||||| |||| Sbjct 30 CATCCAGAAGGAGTCTACTCTGCA 7 >seq20570 Length=3172 Score = 102 bits (112), Expect = 6e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || || || |||||| | ||||| || || || ||| |||| ||| Sbjct 524 TTTCAGATGCAGATCTTCGTGAAAACTCTCACAGGAAAGACAATCACCCTCGAGGTGGAA 465 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| || || ||| | | || || ||||| || || ||||| | || Sbjct 464 AGCTCT-GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCC 406 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||| ||||| | || || || ||| ||||||||| | ||| |||| || Sbjct 405 GGATCAGCAGAGGCTTATCTTCGCAGGAAAGCAGTTGGAGGACGGGAGAACCTTGGCTGA 346 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||| || ||||||||||| | ||| |||||||| Sbjct 345 CTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTG 306 >seq7912 Length=9007 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | || || || ||||| ||| |||| ||| ||| Sbjct 6790 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTC- 6732 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| |||||| || || ||||| | || ||||| Sbjct 6731 CGACACAATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCA 6672 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| || |||| || |||| |||| |||||||| Sbjct 6671 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAGAACATTGGCAGACTACAA 6612 Query 107735 CATTCAAAAGGAGTCTACG 107753 ||| ||||||||||||||| Sbjct 6611 CATCCAAAAGGAGTCTACG 6593 >seq24793 Length=2311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || || || || || || || |||||| | || |||| ||| Sbjct 1613 ATGCAGATCTTCGTTAAGACCTTGACGGGAAAGACGATTACCCTAGAGGTGGAGAGCTC- 1555 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| |||||| || || || || | || ||| || Sbjct 1554 CGACACCATCGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCA 1495 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || ||||| || |||| || |||| ||||||||||||| Sbjct 1494 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACAA 1435 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 ||| || ||||||||||| |||| Sbjct 1434 CATCCAGAAGGAGTCTACTCTGCA 1411 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||| | || || || || || ||| |||| ||| ||| Sbjct 1841 ATGCAGATTTTTGTTAAGACTCTCACGGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 1782 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| |||||| || || || ||| | ||| |||||| Sbjct 1781 -GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 1723 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||||| ||||||| || || | || || ||||| Sbjct 1722 GCAGAGGCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGATTACAA 1663 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 1662 CATCCAGAAGGAGTCGAC 1645 >seq964 Length=27231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| ||||| || || || ||||| || | || ||| ||| Sbjct 9721 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACTCTGGAGGTTGAGAGCTC- 9779 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || ||||| || || || ||| | || |||||| Sbjct 9780 CGACACTATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 9839 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| ||||| ||||||||||| | || | || |||||||| Sbjct 9840 GCAGAGGCTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACGCTCGCTGACTACAA 9899 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||| ||| | ||| | || ||| Sbjct 9900 CATCCAGAAGGAGTCGACGCTTCACCTTGTCTTG 9933 >seq12662 Length=5898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||| | || || || || || ||| |||| ||| ||| Sbjct 3261 ATGCAGATTTTTGTTAAGACTCTCACGGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 3320 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| |||||| || || || ||| | ||| |||||| Sbjct 3321 -GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 3379 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||||| ||||||| || || | || || ||||| Sbjct 3380 GCAGAGGCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGATTACAA 3439 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 3440 CATCCAGAAGGAGTCGAC 3457 >seq1703 Length=21771 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||||| || || || || ||||| | || |||| ||| Sbjct 18594 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTC- 18536 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | | || || |||||| ||||| ||||| | || || || Sbjct 18535 CGATACTATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCTGACCA 18476 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||| ||||||| | | || | || |||||||| Sbjct 18475 GCAGAGGTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGGAGGACTCTTGCTGACTACAA 18416 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || || || |||||| | ||| |||| ||| Sbjct 18415 CATCCAGAAAGAATCTACGCTTCACTTGGTCTTG 18382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398562117616348