Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq11485 104 2e-17
seq37186 102 6e-17
seq20570 102 6e-17
seq7912 100 2e-16
seq24793 91.5 1e-13
seq964 91.5 1e-13
seq12662 89.7 4e-13
seq1703 86.0 5e-12
>seq11485
Length=6519
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||||||||| ||||| |||||||| ||||| || | || ||| |||
Sbjct 4706 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAGACCATCACTTTGGAGGTTGAGAGCTC- 4764
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| ||| | | | | || ||| |||||| || || ||||| | || ||| ||
Sbjct 4765 CGACACTATTGACAATGTGAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCA 4824
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||||| || | || ||||||||||| ||||| | || | ||||| |||||
Sbjct 4825 GCAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGACGCACGCTTGCGGATTACAA 4884
Query 107735 CATTCAAAAGGAGTCTACG 107753
||||| ||||||||||||
Sbjct 4885 TATTCAGAAGGAGTCTACG 4903
Score = 102 bits (112), Expect = 6e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||| ||||| || | || || |||||||||||| | ||| |||| |||
Sbjct 4934 ATGCAGATTTTCGTCAAGACACTCACCGGTAAAACCATTACCCTTGAAGTGGAGAGCT-C 4992
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || ||| |||||| || || |||||| | || ||| ||
Sbjct 4993 TGACACGATCGACAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCGGACCA 5052
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||||| || | || || |||||||| ||||| | || |||| || |||||
Sbjct 5053 GCAGAGACTCATCTTCGCTGGGAAACAGCTCGAGGATGGTCGGACTTTGGCTGATTACAA 5112
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| || ||||||||||| | ||| ||||
Sbjct 5113 CATCCAGAAGGAGTCTACTCTTCACTTGGT 5142
>seq37186
Length=985
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| || || || ||| | || || || || || ||| |||| ||| |||
Sbjct 666 ATGCAAATCTTCGTTAAGACTCTCACTGGGAAGACGATCACCCTCGAGGTGGAAAGCTC- 608
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | | || ||| |||||| || ||||| || | || |||||
Sbjct 607 CGACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCA 548
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | || || |||||| ||||||||| || |||| |||| ||||||||
Sbjct 547 GCAGAGGCTTATCTTCGCCGGGAAACAGTTGGAGGACGGCAGAACATTGGCTGACTACAA 488
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| ||||| ||||| ||
Sbjct 487 CATCCAAAAAGAGTCGAC 470
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||| || || || || || ||||| |||||||| | || |||| |||
Sbjct 209 ATGCAGATTTTCGTTAAGACATTGACCGGCAAGACCATTACTTTGGAGGTGGAGAGCTC- 151
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || | | | | || ||| ||||| || || || || | || ||| ||
Sbjct 150 CGACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCA 91
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | || | || || || ||||| || |||| || |||| |||||||||||||
Sbjct 90 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACAA 31
Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758
||| || ||||||||||| ||||
Sbjct 30 CATCCAGAAGGAGTCTACTCTGCA 7
>seq20570
Length=3172
Score = 102 bits (112), Expect = 6e-17
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609
||| | ||||| || || || |||||| | ||||| || || || ||| |||| |||
Sbjct 524 TTTCAGATGCAGATCTTCGTGAAAACTCTCACAGGAAAGACAATCACCCTCGAGGTGGAA 465
Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668
||| || || ||| | | || || ||||| || || ||||| | ||
Sbjct 464 AGCTCT-GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCC 406
Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728
|||||||||||| ||||| | || || || ||| ||||||||| | ||| |||| ||
Sbjct 405 GGATCAGCAGAGGCTTATCTTCGCAGGAAAGCAGTTGGAGGACGGGAGAACCTTGGCTGA 346
Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||||||||| || ||||||||||| | ||| ||||||||
Sbjct 345 CTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTG 306
>seq7912
Length=9007
Score = 100 bits (110), Expect = 2e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || || || || ||| | || || || ||||| ||| |||| ||| |||
Sbjct 6790 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTC- 6732
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | | || ||| |||||| || || ||||| | || |||||
Sbjct 6731 CGACACAATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCA 6672
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | || || || ||||| || |||| || |||| |||| ||||||||
Sbjct 6671 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAGAACATTGGCAGACTACAA 6612
Query 107735 CATTCAAAAGGAGTCTACG 107753
||| |||||||||||||||
Sbjct 6611 CATCCAAAAGGAGTCTACG 6593
>seq24793
Length=2311
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || || || || || || || || || || |||||| | || |||| |||
Sbjct 1613 ATGCAGATCTTCGTTAAGACCTTGACGGGAAAGACGATTACCCTAGAGGTGGAGAGCTC- 1555
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | | || ||| |||||| || || || || | || ||| ||
Sbjct 1554 CGACACCATCGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCA 1495
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | || | || || || ||||| || |||| || |||| |||||||||||||
Sbjct 1494 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACAA 1435
Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758
||| || ||||||||||| ||||
Sbjct 1434 CATCCAGAAGGAGTCTACTCTGCA 1411
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| |||||||| || ||| | || || || || || ||| |||| ||| |||
Sbjct 1841 ATGCAGATTTTTGTTAAGACTCTCACGGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 1782
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || ||| |||||| || || || ||| | ||| ||||||
Sbjct 1781 -GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 1723
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | || || || ||||| ||||||| || || | || || |||||
Sbjct 1722 GCAGAGGCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGATTACAA 1663
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| || |||||||| ||
Sbjct 1662 CATCCAGAAGGAGTCGAC 1645
>seq964
Length=27231
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || || ||||| ||||| || || || ||||| || | || ||| |||
Sbjct 9721 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACTCTGGAGGTTGAGAGCTC- 9779
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| ||| | | | | || || ||||| || || || ||| | || ||||||
Sbjct 9780 CGACACTATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 9839
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||||| ||| ||||| ||||||||||| | || | || ||||||||
Sbjct 9840 GCAGAGGCTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACGCTCGCTGACTACAA 9899
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||| || |||||||| ||| | ||| | || |||
Sbjct 9900 CATCCAGAAGGAGTCGACGCTTCACCTTGTCTTG 9933
>seq12662
Length=5898
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| |||||||| || ||| | || || || || || ||| |||| ||| |||
Sbjct 3261 ATGCAGATTTTTGTTAAGACTCTCACGGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 3320
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || ||| |||||| || || || ||| | ||| ||||||
Sbjct 3321 -GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 3379
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | || || || ||||| ||||||| || || | || || |||||
Sbjct 3380 GCAGAGGCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGATTACAA 3439
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| || |||||||| ||
Sbjct 3440 CATCCAGAAGGAGTCGAC 3457
>seq1703
Length=21771
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || |||||||| ||||| || || || || ||||| | || |||| |||
Sbjct 18594 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTC- 18536
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||||| | | | | || || |||||| ||||| ||||| | || || ||
Sbjct 18535 CGATACTATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCTGACCA 18476
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | || | ||| || || ||| ||||||| | | || | || ||||||||
Sbjct 18475 GCAGAGGTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGGAGGACTCTTGCTGACTACAA 18416
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||| || || || |||||| | ||| |||| |||
Sbjct 18415 CATCCAGAAAGAATCTACGCTTCACTTGGTCTTG 18382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398562117616348
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