Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 563 1e-155
seq43812 347 1e-90
seq18917 223 4e-53
seq12239 187 3e-42
seq4821 136 5e-27
seq10427 127 2e-24
seq10249 118 1e-21
seq3574 82.4 9e-11
>seq6139
Length=10899
Score = 563 bits (624), Expect = 1e-155
Identities = 729/1004 (73%), Gaps = 2/1004 (0%)
Strand=Plus/Plus
Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008
||||||||||| | |||| ||||| || ||||| ||||||||||| || | ||
Sbjct 5086 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 5145
Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068
|||| ||| ||| | || | || |||||| | || || ||| | ||||| || |
Sbjct 5146 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 5205
Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 179128
|||| || ||||| | |||||||||||| | |||||| || ||| | || || || |
Sbjct 5206 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 5265
Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188
| || || |||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 5266 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 5325
Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248
| || |||| || ||||| ||| | || || || ||| ||| || ||||||||||
Sbjct 5326 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 5385
Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 179307
|||| ||||| |||| || || ||| | ||||| |||||||| || || ||| || |
Sbjct 5386 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 5445
Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367
| || ||||| ||||| || || || ||||||| ||||| || || ||| ||| |||
Sbjct 5446 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 5504
Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCG 179427
|| || || ||||| || ||||| |||||||||||||||| |||||||| |||||
Sbjct 5505 CTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 5564
Query 179428 ATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCAC 179487
|| ||| ||||| | || || || ||||| || || || |||||| | ||||| |||||
Sbjct 5565 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 5624
Query 179488 ATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACT 179547
||||||||||| || ||| | ||||| | |||||| | | ||||||||||| | |||
Sbjct 5625 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 5684
Query 179548 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCT 179607
||||| ||||| || | ||||||||| || ||||| ||||| || || || |
Sbjct 5685 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 5744
Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667
|| |||| || || || ||||| ||||| || || ||||| |||||||| || |||||
Sbjct 5745 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 5804
Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727
|||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || |
Sbjct 5805 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 5864
Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787
||| | ||| | | || |||| | | || |||||| | || || ||||| |||||
Sbjct 5865 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 5924
Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847
|| || || || ||| | ||||| |||||||| || || ||||| |||||||| ||
Sbjct 5925 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 5984
Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907
|| |||||| | || ||||| | || |||||| |||| || ||||| || ||||||
Sbjct 5985 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 6044
Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951
||| | || ||||| || || || ||||| |||| ||||| ||
Sbjct 6045 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6088
>seq43812
Length=736
Score = 347 bits (384), Expect = 1e-90
Identities = 423/574 (74%), Gaps = 2/574 (0%)
Strand=Plus/Plus
Query 177981 TTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTC 178039
||||| | |||| || | |||||||| || || |||| ||||||||| || |||||
Sbjct 5 TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 64
Query 178040 TGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTT 178099
||||||||| |||| ||| |||||||||| || || ||||| || ||||||||||| ||
Sbjct 65 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 124
Query 178100 CCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAG 178159
|||||| | ||||| ||||| |||||||| || || || || ||||||||||||
Sbjct 125 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 184
Query 178160 TCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTA 178219
| | || |||||| | || | || || ||||||| ||| || || | || ||
Sbjct 185 TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTA 244
Query 178220 CAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCG 178279
|| ||||| |||||||||||||| || ||||| || || || || ||||| || || ||
Sbjct 245 CAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCG 304
Query 178280 TTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGC 178339
||||||||||||||||| |||||||| || ||||| | || |||||| | || ||
Sbjct 305 ATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 364
Query 178340 ATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCT 178399
||||| ||||| || || ||||| || || | ||| | || ||||| || |||||
Sbjct 365 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 424
Query 178400 CAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATG 178459
||||| ||||| |||||||| || | | || | ||||||||||| | || || ||
Sbjct 425 AAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTG 484
Query 178460 GGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCAC 178519
||| || | | |||||||| || || |||||||| ||||| ||| | ||| || |
Sbjct 485 GGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT-GCTC 543
Query 178520 ATAACTTCCCGCTTGATCTTGCAGCAGCTGAGTC 178553
| |||||||| || || || || || | ||||||
Sbjct 544 ACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 223 bits (246), Expect = 4e-53
Identities = 297/413 (72%), Gaps = 0/413 (0%)
Strand=Plus/Plus
Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617
||||| | ||| ||||| |||| | ||||| || || | || ||||| || || ||
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCC 177677
|||||||| || | ||| | |||||| | || || |||| ||| | ||||||||
Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312
Query 177678 CCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 177737
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372
Query 177738 ATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 177797
|| || || ||||| || | || |||| || |||||| | || || ||||| |||
Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432
Query 177798 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTC 177857
|||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | ||
Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492
Query 177858 TTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGT 177917
| ||||| | | || | | |||||||| ||||||||||||||| | ||||
Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552
Query 177918 CTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGC 177970
|| |||||||| || ||||| ||||||||| || || ||||||||||| ||
Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605
>seq12239
Length=6102
Score = 187 bits (206), Expect = 3e-42
Identities = 375/548 (68%), Gaps = 6/548 (1%)
Strand=Plus/Minus
Query 178951 GATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179010
||||||||| | |||| ||||| || ||||| ||||||||||| || | || ||
Sbjct 611 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 552
Query 179011 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGG 179070
|| ||| ||| | || | || |||||| | || || ||| | ||||| || |||
Sbjct 551 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 492
Query 179071 TACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 179129
|| | ||||| | ||||||| |||| | ||||| ||| |||| | || | || ||
Sbjct 491 TATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGT 433
Query 179130 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 179189
|| || |||||| || | | | |||||| | | |||| | ||||| ||| | ||
Sbjct 432 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGGTCATGAAGCACA 374
Query 179190 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 179249
|| |||| || ||||| ||| | || || ||| ||| || |||||||| |
Sbjct 373 AGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAG 314
Query 179250 TGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTA 179308
||| ||||| |||| || || ||| | ||||| |||||||| || || ||| || |
Sbjct 313 TGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT- 255
Query 179309 TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTC 179368
| | ||||| ||||| || || || ||||||| ||||| | || || || ||||
Sbjct 254 TGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTTC 195
Query 179369 TCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGA 179428
| || || || | || ||||| ||||||||||||| || |||||||| |||| |
Sbjct 194 TAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTTA 136
Query 179429 TCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACA 179488
| ||| | ||| | || || || |||| || | || |||||| | |||| | || |
Sbjct 135 TATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGAACCATCTACATA 76
Query 179489 TGATGGGA 179496
||||||||
Sbjct 75 TGATGGGA 68
>seq4821
Length=12785
Score = 136 bits (150), Expect = 5e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597
||| |||| || |||||||| |||||||| ||||| | || ||||| || |||||||||
Sbjct 11182 TACGTCCTCGACGCTGCTGAGGAAGCAGGAATTGACTTGCCTTACTCTTGCCGTGCTGGT 11123
Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657
| || || | |||||| |||||| | || ||| |||| || |||||||||||| |
Sbjct 11122 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 11063
Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717
||||| ||||||||||| ||||| | |||||| | | ||||| | || || || ||
Sbjct 11062 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 11003
Query 138718 TCCGATTGTATAATTGAAAC 138737
|| ||| || ||||| ||
Sbjct 11002 TCTGATGTTACCATTGAGAC 10983
>seq10427
Length=7142
Score = 127 bits (140), Expect = 2e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597
||| |||| || |||||||| |||||||| || || | || ||||| || |||||||||
Sbjct 1518 TACGTCCTCGACGCTGCTGAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 1459
Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657
| || || | |||||| |||||| | || ||| | || || |||||||||||| |
Sbjct 1458 TCTTGCTCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCAGTTGACCAGTCTGACCAGAGT 1399
Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717
||||| ||||||||||| ||||| | |||||| | | ||||| | || || || ||
Sbjct 1398 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 1339
Query 138718 TCCGATTGTATAATTGAAAC 138737
|| ||| || ||||| ||
Sbjct 1338 TCTGATGTTACCATTGAGAC 1319
>seq10249
Length=7246
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597
||| |||| || ||||| || |||||||| || || | || ||||| || ||||| |||
Sbjct 5638 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 5697
Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657
| || || | ||| || |||||| | || || || || || |||||||||||| |
Sbjct 5698 TCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTACCGTTGACCAGTCTGACCAGAGT 5757
Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717
||||| ||||||||||| ||||| | |||||| | | ||||| | || || || ||
Sbjct 5758 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 5817
Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752
|| ||| || ||||| || | ||||| || ||
Sbjct 5818 TCTGATGTTACCATTGAGACCCACAAAGAAGAAGA 5852
>seq3574
Length=15223
Score = 82.4 bits (90), Expect = 9e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 138501 TGGCGAAGAACAAATCTTTGACTGTGC-TGATGATCAGTACATCCTTGATGCTGCTGATG 138559
|||| ||||| | ||||| ||| | ||| || || ||||| | ||||||||||| |
Sbjct 1227 TGGCCAAGAAAACGAGTTTGA-TGTCCCTGACGACCAATACATATTGGATGCTGCTGAAG 1169
Query 138560 AAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTA 138619
|||| || |||| | || ||||| || | || ||||| ||||| ||||| || ||||
Sbjct 1168 AAGCTGGAGTTGACTTGCCTTACTCTTGCAGAGCCGGTGCCTGTTCCACCTGCGCCGGTA 1109
Query 138620 AATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTG 138679
| | | |||| || || |||||||| || || ||||| ||| | || |||
Sbjct 1108 AGATCGAGAAAGGTCAAGTTGACCAGTCTGATGGTTCGTTTCTTGAGGATCATCACTTTG 1049
Query 138680 CAGCAGGATTTATCATGACTTGCGTAGCATACCC 138713
||| | | || ||||||| || || |||||
Sbjct 1048 AGAAAGGTTATGTCTTGACTTGTGTGGCTTACCC 1015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605177124385120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |