Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq11485 159 7e-34
seq24793 158 2e-33
seq4396 156 8e-33
seq1703 156 8e-33
seq964 150 4e-31
seq14782 138 2e-27
seq37186 136 8e-27
seq12662 129 1e-24
seq7912 123 5e-23
seq7348 120 6e-22
seq4867 118 2e-21
seq3737 109 1e-18
seq10768 102 2e-16
seq2054 95.1 2e-14
seq806 84.2 4e-11
>seq11485
Length=6519
Score = 159 bits (176), Expect = 7e-34
Identities = 175/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || | || || ||||| || ||||| ||||| ||||| |
Sbjct 4934 TACCACCACGGAGACGGAGGACGAGATGAAGCGTAGACTCCTTCTGAATATTGTAATCCG 4875
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | || || || || ||||| ||||| ||||| ||||| || || || ||||
Sbjct 4874 CAAGCGTGCGTCCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAG 4815
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760
| ||||||||||| || || ||||||||||| ||||| ||||| || || || | ||
Sbjct 4814 GAATTCCTTCCTTGTCCTGGATCTTTGCTTTCACATTGTCAATAGTGTCGG-AGCTCTCA 4756
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| |||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct 4755 ACCTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 4706
Score = 111 bits (122), Expect = 3e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || | || ||||| || || ||||| || || ||||| |
Sbjct 4706 TACCACCACGGAGACGAAGTACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAATCGG 4647
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | ||||||||||| || || ||||| ||||| || || || || || ||||
Sbjct 4646 CCAGGGTGCGTCCGTCTTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGGTCGGGAG 4587
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760
| || |||||||| || || |||||||| || ||||| || || || || || | ||
Sbjct 4586 GGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCTATAGTGTC-GGAGCTCTCG 4528
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | ||| || |||||||| || | || || || || || |||||
Sbjct 4527 ACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATTTGCAT 4478
>seq24793
Length=2311
Score = 158 bits (174), Expect = 2e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || | || ||||| || ||||| || ||||| || ||||| ||||| || ||||
Sbjct 1158 ACCACCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGC 1217
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
||| | | ||| || || || || |||||||| ||||| || | || || ||||||||
Sbjct 1218 GAGAGTCCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGG 1277
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761
|| |||||||||||||| ||||| ||||| || || |||||||| || || | || |
Sbjct 1278 GATCCCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTC-CGAGCTCTCAA 1336
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | || || ||||| || ||||| ||||| ||||| ||||||||
Sbjct 1337 CTTCGAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1385
Score = 120 bits (132), Expect = 6e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
||||| | ||||||||||| || ||||| || || || || | | |||| ||||||
Sbjct 1402 AGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCT 1461
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| || || || || || ||||| | || || || || ||||| || || ||||| |||
Sbjct 1462 TCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCT 1521
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGT 82777
|| ||||||||||| || || || || || || || | || || || | || |||||
Sbjct 1522 TGGATCTTTGCTTTGACGTTGTCGATGGTGTC-GGAGCTCTCCACCTCTAGGGTAATCGT 1580
Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||| || ||||| ||||| || || ||||||||
Sbjct 1581 CTTTCCCGTCAAGGTCTTAACGAAGATCTGCAT 1613
>seq4396
Length=13502
Score = 156 bits (172), Expect = 8e-33
Identities = 174/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || | || ||||| || ||||| || ||||| || ||||| ||||| || ||||
Sbjct 557 ACCACCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGC 498
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
||| | || ||||| || || || |||||||| ||||| || | || || ||||||||
Sbjct 497 GAGAGTCCTGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGG 438
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761
|| |||||||||||||| ||||| ||||| || || |||||||| || || | || |
Sbjct 437 GATCCCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTC-CGAGCTCTCCA 379
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| |||| || || ||||| || ||||| ||||| || || || ||||||
Sbjct 378 CCTCCAGTGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCATT 329
Score = 113 bits (124), Expect = 9e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || ||||| || || || || |||| ||| | | || ||||| |||||
Sbjct 12033 TGAAGGGTCGACTCTTTTTGGATGTTGTAGTCAGCGAGAGTACGCCCATCTTCAAGTTGC 11974
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || || ||||| || || || ||||| || || || |||||||| || ||||||||
Sbjct 11973 TTCCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTTG 11914
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTT-CTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| || || || || || || | || || | || || | || |||||||| || ||
Sbjct 11913 GCTTTAACGTTGTCGATGGTGTC-TGAGCTTTCCACCTCGAGGGTGATCGTCTTTCCGGT 11855
Query 82787 CAACGTCTTTACAAATATCTGCAT 82810
| ||||| || |||||||||||
Sbjct 11854 GAGAGTCTTAACGAATATCTGCAT 11831
>seq1703
Length=21771
Score = 156 bits (172), Expect = 8e-33
Identities = 164/213 (77%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
||||| | |||||||| || || ||||||||||||||||||| ||| | || || ||
Sbjct 18611 AGAACGAGATGCAGAGTCGACTCCTTCTGTATATTATAATCAGCAAGAGTCCTCCCATCC 18670
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| | || ||||| |||||||| || || || ||||| ||||| || ||||||||||||
Sbjct 18671 TCCAACTGCTTTCCCGCAAAGATCAGCCTCTGCTGATCCGGAGGGATCCCTTCCTTATCT 18730
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGT 82777
|| ||||| || || || || || || |||||| || | || || |||||||| || ||
Sbjct 18731 TGTATCTTAGCCTTGACGTTGTCGATTGTATCA-GAGCTCTCCACCTCCAAAGTGATAGT 18789
Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||| || || | ||||| || || ||||||||
Sbjct 18790 CTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 18822
Score = 152 bits (168), Expect = 1e-31
Identities = 172/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| | | ||||| || ||||| || |||||||||||||| || || || ||||
Sbjct 18368 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGCA 18427
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | || || || || | || || || |||||||| | || || || || || ||
Sbjct 18428 AGAGTCCTCCCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGG 18487
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762
|| ||||||||||| |||||||| || || ||||| ||||| ||||| || | || ||
Sbjct 18488 ATCCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATAGTATC-GGAGCTCTCCAC 18546
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || ||||| || ||||| ||||| ||||| ||||||||
Sbjct 18547 CTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 18594
Score = 125 bits (138), Expect = 1e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|| ||||| || || || |||||||| || || ||||||| | | | ||| || ||
Sbjct 18158 ACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCG 18217
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
|| || || ||||| || || || || || || || ||||| || || || || |||||
Sbjct 18218 AGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGGGATACCCTCTTTGTCTTGG 18277
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
|| || ||||| || || ||||| || || | || || || ||||| ||||||||
Sbjct 18278 ATTTTCGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAAAGTGATCGTCTTT 18337
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||||||||| || || ||||||||
Sbjct 18338 CCTGTCAACGTCTTAACGAAGATCTGCAT 18366
>seq964
Length=27231
Score = 150 bits (166), Expect = 4e-31
Identities = 165/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| ||||| || || || || ||||| ||||| || |||| || | | |||
Sbjct 10620 ACGAAGAACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAGTCAGCAAGCGTGCGACC 10561
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || || ||||| ||||| ||||| ||||| || ||||| || ||||||||
Sbjct 10560 ATCCTCAAGCTGCTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTT 10501
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
|| ||||| || || || ||||| || || || || | || | || |||||||| || |
Sbjct 10500 GTCCTGAATTTTAGCCTTCACATTGTCGATTGTGTC-TGAGCTCTCAACTTCCAAGGTAA 10442
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||||||||||| ||||| ||||| || |||||
Sbjct 10441 TAGTCTTGCCTGTCAGAGTCTTCACAAAGATTTGCAT 10405
>seq14782
Length=4961
Score = 138 bits (152), Expect = 2e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|||||||||| ||| ||||| | ||| ||||| || || ||||| || || ||||| |
Sbjct 1969 CCTCCTCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCG 2028
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | || |||||||| || || || || || ||||| || | || || || || ||
Sbjct 2029 AGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 2088
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || |||||||| || || ||||| || ||||| || | ||| ||
Sbjct 2089 ATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGACC 2148
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
|| | ||||||||||| || || | || || || || ||||||||| ||
Sbjct 2149 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 2199
>seq37186
Length=985
Score = 136 bits (150), Expect = 8e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
||||||||||| || ||||| || || || || | | |||| |||||||| || ||
Sbjct 7 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCAAGCTGC 66
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || || ||||| | || || || || ||||| || || ||||| ||||| |||||
Sbjct 67 TTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGATCTTA 126
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| ||||| ||||| || || || | || || |||||||| || |||||||| ||
Sbjct 127 GCTTTGACATTGTCAATGGTGTC-GGAGCTCTCCACCTCCAAAGTAATGGTCTTGCCGGT 185
Query 82787 CAACGTCTTTACAAATATCTGCAT 82810
||| ||||| || || ||||||||
Sbjct 186 CAATGTCTTAACGAAAATCTGCAT 209
>seq12662
Length=5898
Score = 129 bits (142), Expect = 1e-24
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
||||| | ||||||||||| || ||||| || || || |||| ||| |||| ||||||
Sbjct 3700 AGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCT 3641
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| || || || || || ||||| | || || || || || || || || ||||| |||
Sbjct 3640 TCAAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCT 3581
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGT 82777
|| ||||||||||| || || || || || || || | || || || | || |||||
Sbjct 3580 TGGATCTTTGCTTTGACGTTGTCGATGGTGTC-GGAGCTCTCCACCTCTAGGGTAATCGT 3522
Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||| || ||||| ||||| || || ||||||||
Sbjct 3521 CTTTCCCGTCAAGGTCTTAACGAAGATCTGCAT 3489
Score = 127 bits (140), Expect = 4e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||||| || ||||| | || || || ||||| || || || || | || | | |||
Sbjct 3932 ACGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACC 3873
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || |||||||| ||||| || | || || |||||||| || ||||||||
Sbjct 3872 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 3813
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
|||||| ||||| ||||| || || |||||||| || || | || ||||| | || |
Sbjct 3812 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTC-CGAGCTCTCAACTTCGAGGGTGA 3754
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || ||||| ||||| || || ||||||||
Sbjct 3753 TGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717
>seq7912
Length=9007
Score = 123 bits (136), Expect = 5e-23
Identities = 159/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||||| || ||||| || || || || || || ||||| || || | || | | |||
Sbjct 6119 ACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCTAAGGTGCGACC 6178
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || || ||||| ||||| || | || || || ||||| || ||||||||
Sbjct 6179 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTT 6238
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
||| || ||||| || || ||||| ||||| || ||| || | || || ||||| || |
Sbjct 6239 ATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCA-GAGCTCTCCACCTCCAACGTGA 6297
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||||||| || | ||||| ||||| ||||||||
Sbjct 6298 TGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 6334
>seq7348
Length=9517
Score = 120 bits (132), Expect = 6e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || | ||||| || || || || ||||| || || || || |
Sbjct 453 TACCACCACGGAGACGGAGGGCCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTG 394
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | ||| || || || || |||||||| ||||| || | || ||||| ||||
Sbjct 393 CTAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAG 334
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760
| || |||||||| || || ||||| || ||||| || ||||| || ||| || | ||
Sbjct 333 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCAATGGTGTCAG-AGCTCTCC 275
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | || || ||||| || ||||| ||||| || |||||||||||
Sbjct 274 ACCTCAAGTGTGATGGTCTTACCAGTCAAGGTCTTCACGAATATCTGCAT 225
>seq4867
Length=12713
Score = 118 bits (130), Expect = 2e-21
Identities = 100/123 (81%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657
|||||| ||||| ||||| || |||||||| || || || ||||| || ||| ||| ||
Sbjct 7594 CAGAACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAAAGCGTTCGACCATC 7653
Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717
||||||||||| ||||||||||| ||||| ||||||||||| ||||| || || || ||
Sbjct 7654 CTCTAGTTGTTTCCCAGCAAAGATGAGTCTCTGTTGATCTGGTGGTATCCCCTCTTTGTC 7713
Query 82718 TTG 82720
||
Sbjct 7714 CTG 7716
>seq3737
Length=14779
Score = 109 bits (120), Expect = 1e-18
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680
|||| || || || ||||||| ||| | || || ||||| || || || || || ||||
Sbjct 9320 CTTTGTGGATGTTGTAATCAGCAAGAGTCCTGCCATCTTCGAGCTGCTTACCGGCGAAGA 9379
Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740
| | || || ||||| ||||| || ||||||||||| || ||||| ||| | || || |
Sbjct 9380 TCAACCTCTGCTGATCGGGAGGGATACCTTCCTTATCGTGGATCTTGGCTGTAACGTTGT 9439
Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800
| ||||| || ||| || || | || |||||||| || || | ||||| || |
Sbjct 9440 CGATCGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTCTTTCCGGTAAGAGTCTTAACGA 9499
Query 82801 ATATCTGCAT 82810
||||||||||
Sbjct 9500 ATATCTGCAT 9509
>seq10768
Length=6938
Score = 102 bits (112), Expect = 2e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|| ||||| ||||| || |||||||| || || || |||| || ||| || || |||
Sbjct 3331 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGCGTTCGGCCATCCTCT 3390
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720
|| ||||| |||||||||||||| || ||||||||||| ||||| || || ||||| ||
Sbjct 3391 AGCTGTTTCCCAGCAAAGATTAGCCTCTGTTGATCTGGTGGTATCCCCTCTTTATCCTG 3449
>seq2054
Length=20018
Score = 95.1 bits (104), Expect = 2e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680
||||||| || || || |||| | | | | || ||||| || ||||| || || ||||
Sbjct 3204 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 3263
Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740
| | ||| || ||||||||||| || ||||| || ||||| ||||| || || ||||| |
Sbjct 3264 TCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTGT 3323
Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800
| || || || | || || || | || || ||||| || || | || || || |
Sbjct 3324 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTCACGA 3383
Query 82801 ATATCTGCAT 82810
| ||||||||
Sbjct 3384 AGATCTGCAT 3393
>seq806
Length=29032
Score = 84.2 bits (92), Expect = 4e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | || || || || || ||||| || || || || | || | | ||
Sbjct 17961 ACGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCC 18020
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|||||| || || || || || ||||| |||| || || || || || || ||||||||
Sbjct 18021 GTCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCGGGATCCCTTCCTT 18080
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| || ||||| || || || || || || || || | || || || | |||||
Sbjct 18081 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTAT 18140
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| || || | || || || || ||||||||
Sbjct 18141 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 18176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981012893384148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |