Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq14782 111 1e-19 seq1703 107 1e-18 seq3667 104 2e-17 seq25552 89.7 3e-13 seq806 89.7 3e-13 seq2054 86.0 4e-12 seq1045 86.0 4e-12 >seq14782 Length=4961 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | |||| || ||||| ||| || || ||||||||||| | | Sbjct 1969 CCTCCTCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCG 2028 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | |||| |||| || || ||||| || |||| ||||||||| || | || Sbjct 2029 AGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 2088 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || | | |||| ||| | |||||| |||||| || Sbjct 2089 ATCCCTTCCTTGTCCTGAATCTT-GGCCTTGACATTGTCGATCGTGTCGGATGATTCGAC 2147 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || ||||| || || |||| ||||| || ||||||||||| Sbjct 2148 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2195 >seq1703 Length=21771 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | |||||||||||| || || || |||||| || ||||||||||| | Sbjct 18140 CCACCACGGAGACGTAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCC 18199 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | || || || || || |||| | |||||| || | || Sbjct 18200 AAGGTGCGACCATCCTCGAGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGGG 18259 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| |||||| |||| || | ||| | ||||||| ||||| Sbjct 18260 ATACCCTCTTTGTCTTGGATTTTCGCTTTC-ACGTTGTCAATGGTGTCGGAACTCTCCAC 18318 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||||| || ||||| ||||| || || ||||||||||| Sbjct 18319 CTCTAAAGTGATCGTCTTTCCTGTCAACGTCTTAACGAAGATCTGCAT 18366 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || ||||| || || || ||| || || || |||||||||| | ||||| | Sbjct 18835 ACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACC 18894 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | || |||||||| || || | |||||||||||| | || | ||||| || Sbjct 18895 ATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATCCCTTCCTT 18954 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || |||| || | ||| | ||||||| |||||| || | |||| Sbjct 18955 GTCCTGGATCTTGGCTTTC-ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGA 19013 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTTT 33762 | || || || || | ||||| || ||||| ||||| ||| || |||| Sbjct 19014 TTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTTTGTTG-GTTT 19062 >seq3667 Length=14967 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| |||| || | ||| Sbjct 5519 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGT 5578 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || |||| |||||||| || | || | ||||| ||||| || || Sbjct 5579 TTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 5638 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| | ||| ||| | ||||||| ||||| || || | |||||||| || || || Sbjct 5639 GCTTTGA-CATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGT 5697 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 5698 TAGGGTTTTCACGAAGATCTGCAT 5721 >seq25552 Length=2169 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||| || | | || || | || || | ||||| ||||| || | Sbjct 434 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 375 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 ||| |||||||||||| | || | |||||||||||| || || | || |||| | Sbjct 374 TCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTT-GGCTTTGACATTG 316 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||||||| || || || || | ||||| || || || |||| ||||| || Sbjct 315 TCGATGGTGTCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACG 256 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 255 AAGATCTGCAT 245 >seq806 Length=29032 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||||||||| |||| || | || || ||||| || Sbjct 17985 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAA 18044 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| |||||||| || |||| | ||||| ||||| || || || | | | Sbjct 18045 GATCAGTCGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 18103 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| || || || || | || ||||| || || |||| ||||| | Sbjct 18104 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCA 18163 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 18164 CGAAGATCTGCAT 18176 >seq2054 Length=20018 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||| || | | || || | || || | ||||| ||||| || | Sbjct 3204 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 3263 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||| | |||||||||| | || | |||||||||||| || || | | |||| | Sbjct 3264 TCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTGGATCTT-GGCCTTGACATTG 3322 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||||||| || || || || | ||||| || || || |||| ||||| || Sbjct 3323 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTCACG 3382 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 3383 AAGATCTGCAT 3393 >seq1045 Length=26565 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| |||| || | ||| Sbjct 2816 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGT 2875 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || |||| |||||||| || | || | ||||| ||||| || || Sbjct 2876 TTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 2935 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | | | ||| | ||||||| || || || || | ||||| || || || || Sbjct 2936 GCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGT 2994 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 2995 TAGGGTTTTCACGAAGATCTGCAT 3018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328444678429440