Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq2241 84.2 2e-11 >seq2241 Length=19256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 142534 AAGAAGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGAC 142593 ||||| |||| || ||| ||| ||| | | || ||||||||| |||| || | Sbjct 2039 AAGAACAATCCTGATGATCGGCGTATCATATTATCGGCTTGGAACCCTTCTGATCTCAAG 1980 Query 142594 GACATGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGT 142653 ||||| ||||||||||| |||||| | || ||| |||| | |||| | | Sbjct 1979 CTGATGGCGCTTCCTCCGTGCCACATGTTTGCACAGTTCTACGTGGCG--GAAGGGGAG- 1923 Query 142654 CTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATT 142713 || || || ||| ||||||||||||| || || | ||| || || ||||| |||||| Sbjct 1922 CTCTCGTGTCAGATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATT 1863 Query 142714 GCTTCGTACGCGCTTCTCAC 142733 ||||| ||| | ||||| || Sbjct 1862 GCTTCCTACTCTCTTCTGAC 1843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500094221072320