Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq43812 399 6e-107 seq18917 197 4e-46 >seq43812 Length=736 Score = 399 bits (442), Expect = 6e-107 Identities = 428/562 (76%), Gaps = 3/562 (1%) Strand=Plus/Plus Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | ||||||| ||||||| || || || || |||| ||||||| | || ||||| Sbjct 5 TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 64 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||||| ||| | |||||||| || || || |||||||| |||||||| || Sbjct 65 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 124 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||| | ||||| |||||||||||||| || || ||||| ||||| ||||| ||||| Sbjct 125 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 184 Query 20107 GCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTT 20165 | || || || | | ||| | | || || || ||| | ||| | || | || | Sbjct 185 TTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGT 243 Query 20166 ACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGAC 20225 ||| || || ||||||||||| || || ||||| ||||| ||||| ||||| ||||| | Sbjct 244 ACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCC 303 Query 20226 GTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTG 20285 | |||||||||||||| ||| |||||||||| |||||| |||| |||||| | || | Sbjct 304 GATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGG 363 Query 20286 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 20345 | |||||||| ||||| |||||||| |||| || || || ||| ||||| || || | Sbjct 364 CTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 423 Query 20346 TGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTT 20405 | || |||||||| || ||||| || | | || | | || ||||| ||| |||||| Sbjct 424 TAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTT 483 Query 20406 GGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTC 20465 ||||||| ||| | || |||||||| || || | || || ||||||||||| ||||||| Sbjct 484 GGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 543 Query 20466 ATAACTTCCCACTTGACCTTGC 20487 | |||||||| || ||||| || Sbjct 544 ACAACTTCCCTCTAGACCTAGC 565 >seq18917 Length=3610 Score = 197 bits (218), Expect = 4e-46 Identities = 293/411 (71%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 3198 TAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 3257 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAG 19628 ||| | || ||| || | || | || ||||| ||||||||||| ||||| |||| Sbjct 3258 TCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAG 3316 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || |||||||| |||||||| || | Sbjct 3317 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTA 3376 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || || | || || || || || || Sbjct 3377 TTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTATCCGATCTG 3434 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 ||||||| || ||||||||||||| |||||||| || || | |||| | || | Sbjct 3435 GGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCT 3494 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 ||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 3495 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 3554 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGC 19917 || ||| | ||||||||| |||||| || || ||||| |||||||| || Sbjct 3555 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148714396417656