Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq12662 109 5e-19 seq25552 107 2e-18 seq549 107 2e-18 seq2054 86.0 6e-12 seq3667 84.2 2e-11 seq964 84.2 2e-11 seq11485 82.4 7e-11 seq10768 82.4 7e-11 >seq12662 Length=5898 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || ||| ||||||| || || |||||||||||| | ||| || | Sbjct 3931 CGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCA 3872 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | |||| |||||||| || |||||||| |||||||| ||| Sbjct 3871 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTA 3812 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || || | ||| ||||||| || | Sbjct 3811 TCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTCTCAACTTCGAGGGTGATG 3752 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||||| || || | ||| |||||||| Sbjct 3751 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717 >seq25552 Length=2169 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || ||||||||||| || ||||| |||||||||||||||||||| ||| Sbjct 434 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 375 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | |||||||| ||||| ||||| || |||||||| || || || ||| | | | Sbjct 374 TCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGT 315 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || |||| | ||| ||||||| || | || || || || || ||||| | || Sbjct 314 CGATGGTGTCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACGA 255 Query 132114 AAATCTGCATGACTTATTAGATTCCTTTTCT 132144 | |||||||| ||| | || ||| | |||| Sbjct 254 AGATCTGCATCTCTT-TGAGGTTCGTCTTCT 225 >seq549 Length=32968 Score = 107 bits (118), Expect = 2e-18 Identities = 347/519 (67%), Gaps = 26/519 (5%) Strand=Plus/Plus Query 46662 ATCGAGTGCGTACACACTGAGATGTATAGTCTGCTCATAGAACAATTG-ATTAGAGACGA 46720 |||||| | | ||| | |||||||| ||||| ||| |||| || || || | |||| | Sbjct 20023 ATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTAGA-CACTTACATCAAAGACAA 20081 Query 46721 GCACGAGCGCGACACGTTGCTGAATGCGTTCGAGCACG-TGCCATGCGTTCGCAAAAAGG 46779 | ||| | ||| | | ||| ||||| ||| | || ||||| ||||||| Sbjct 20082 CAAGGAGAGGGACCATCTCTTCCGCGCGATCGAG-ACGATCCCTTGCGTAAAGAAAAAGG 20140 Query 46780 CCCAGTGGGCCATGAAGTGGATCGA-GAGCGAGACCGCCACGCTGGCCGAGCGCATGGTG 46838 |||| |||||| ||||||||||||| | || | ||| | |||||| | || ||| Sbjct 20141 CCCAATGGGCCTTGAAGTGGATCGATGGGCCTCA-GGCC---TTCGCCGAGAGGATCGTG 20196 Query 46839 GCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTACATT 46898 || ||||| || ||||| | || || |||||||| || | | || || | | Sbjct 20197 GCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGCTCGATCTTCTGGCTG 20256 Query 46899 AA-AACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGA 46957 || || | ||| | |||||||| || || ||| |||||| |||||||| | ||||| Sbjct 20257 AAGAAGCGTGGGC-TCATGCCGGGTCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGA 20315 Query 46958 AGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAA 47017 ||| || ||| ||||| ||||| || || | | | | | | | ||| | Sbjct 20316 AGGCCTCCACTGCGACTTCGCGTGCCT-GAT--CTACTCCCTCCTTAGGACGAAGCT--- 20369 Query 47018 CTCGGACACGATCCTGAG---CATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTT 47074 |||||| | | |||| || | | || |||||| ||||| | ||||||| | Sbjct 20370 CTCGGAGGAGCGCGTGAGGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGT 20429 Query 47075 TACTGCG--GCGCTGCCCGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATA 47131 |||| ||||| ||||| ||| ||| |||| |||||| ||| ||| | | || Sbjct 20430 --GTGCGACGCGCT-CCCGTGCGCGTTGGTGGGGATGAACCGGGAGTTGATGAGTCAGTA 20486 Query 47132 TATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 47170 ||||||||| ||||||||| | || |||| | |||||| Sbjct 20487 TATTGAGTTCGTGGCGGATAGGCTTTTGGGGGCGCTCGG 20525 >seq2054 Length=20018 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || ||||||||||| || ||||| |||||||||||||||||||| ||| Sbjct 3204 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 3263 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | | ||| ||||||||||| || |||||||| || || || || | | | Sbjct 3264 TCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTGT 3323 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || |||| | ||| || |||| || | || || || || || ||||| | || Sbjct 3324 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTCACGA 3383 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 3384 AGATCTGCAT 3393 >seq3667 Length=14967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| ||| || ||||||||||| |||| Sbjct 5528 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCG 5587 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || ||||| |||||||| || || || || ||| | Sbjct 5588 AAGATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACA 5647 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | || || |||| || | ||| || || || || ||||| Sbjct 5648 TTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTC 5707 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 5708 ACGAAGATCTGCAT 5721 >seq964 Length=27231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || ||||| ||| || |||||| ||| |||||||||||||||| Sbjct 9686 GACTCCTTCTGGATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCG 9627 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| || ||||| || || || || || | Sbjct 9626 AAGATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACG 9567 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||| ||||||| || | || || || || |||||||| Sbjct 9566 TTATCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTC 9507 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 9506 ACGAAAATTTGCAT 9493 >seq11485 Length=6519 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | ||||| || || |||||||| || || || || ||| || Sbjct 5143 AACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTC 5084 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||| || | |||| || | ||| || || ||||| |||||||| || || Sbjct 5083 GAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTG 5024 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||||| | || | || || | ||||||||| | || | ||||| Sbjct 5023 AATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCACTTCAAGGGTAATGGTTTT 4964 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || | |||||||||||| Sbjct 4963 ACCGGTGAGTGTCTTGACGAAAATCTGCAT 4934 >seq10768 Length=6938 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| ||||| || | | |||||||| || ||||||||||| | || || ||| Sbjct 3327 CAAGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGCGTTCGGCCATC 3386 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 || |||||||| || | | ||||||| | |||||||||||| ||||| || |||||||| Sbjct 3387 CTCTAGCTGTTTCCCAGCAAAGATTAGCCTCTGTTGATCTGGTGGTATCCCCTCTTTATC 3446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476225550047520