Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq12662 109 5e-19
seq25552 107 2e-18
seq549 107 2e-18
seq2054 86.0 6e-12
seq3667 84.2 2e-11
seq964 84.2 2e-11
seq11485 82.4 7e-11
seq10768 82.4 7e-11
>seq12662
Length=5898
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || ||| ||||||| || || |||||||||||| | ||| || |
Sbjct 3931 CGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCA 3872
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| || ||||| || || | |||| |||||||| || |||||||| |||||||| |||
Sbjct 3871 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTA 3812
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || ||||| | || | || || | ||| ||||||| || |
Sbjct 3811 TCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTCTCAACTTCGAGGGTGATG 3752
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| |||||||||| || || | ||| ||||||||
Sbjct 3751 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717
>seq25552
Length=2169
Score = 107 bits (118), Expect = 2e-18
Identities = 151/211 (72%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993
|||| || ||||||||||| || ||||| |||||||||||||||||||| |||
Sbjct 434 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 375
Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053
| |||||||| ||||| ||||| || |||||||| || || || ||| | | |
Sbjct 374 TCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGT 315
Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113
| | || |||| | ||| ||||||| || | || || || || || ||||| | ||
Sbjct 314 CGATGGTGTCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACGA 255
Query 132114 AAATCTGCATGACTTATTAGATTCCTTTTCT 132144
| |||||||| ||| | || ||| | ||||
Sbjct 254 AGATCTGCATCTCTT-TGAGGTTCGTCTTCT 225
>seq549
Length=32968
Score = 107 bits (118), Expect = 2e-18
Identities = 347/519 (67%), Gaps = 26/519 (5%)
Strand=Plus/Plus
Query 46662 ATCGAGTGCGTACACACTGAGATGTATAGTCTGCTCATAGAACAATTG-ATTAGAGACGA 46720
|||||| | | ||| | |||||||| ||||| ||| |||| || || || | |||| |
Sbjct 20023 ATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTAGA-CACTTACATCAAAGACAA 20081
Query 46721 GCACGAGCGCGACACGTTGCTGAATGCGTTCGAGCACG-TGCCATGCGTTCGCAAAAAGG 46779
| ||| | ||| | | ||| ||||| ||| | || ||||| |||||||
Sbjct 20082 CAAGGAGAGGGACCATCTCTTCCGCGCGATCGAG-ACGATCCCTTGCGTAAAGAAAAAGG 20140
Query 46780 CCCAGTGGGCCATGAAGTGGATCGA-GAGCGAGACCGCCACGCTGGCCGAGCGCATGGTG 46838
|||| |||||| ||||||||||||| | || | ||| | |||||| | || |||
Sbjct 20141 CCCAATGGGCCTTGAAGTGGATCGATGGGCCTCA-GGCC---TTCGCCGAGAGGATCGTG 20196
Query 46839 GCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTACATT 46898
|| ||||| || ||||| | || || |||||||| || | | || || | |
Sbjct 20197 GCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGCTCGATCTTCTGGCTG 20256
Query 46899 AA-AACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGA 46957
|| || | ||| | |||||||| || || ||| |||||| |||||||| | |||||
Sbjct 20257 AAGAAGCGTGGGC-TCATGCCGGGTCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGA 20315
Query 46958 AGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAA 47017
||| || ||| ||||| ||||| || || | | | | | | | ||| |
Sbjct 20316 AGGCCTCCACTGCGACTTCGCGTGCCT-GAT--CTACTCCCTCCTTAGGACGAAGCT--- 20369
Query 47018 CTCGGACACGATCCTGAG---CATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTT 47074
|||||| | | |||| || | | || |||||| ||||| | ||||||| |
Sbjct 20370 CTCGGAGGAGCGCGTGAGGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGT 20429
Query 47075 TACTGCG--GCGCTGCCCGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATA 47131
|||| ||||| ||||| ||| ||| |||| |||||| ||| ||| | | ||
Sbjct 20430 --GTGCGACGCGCT-CCCGTGCGCGTTGGTGGGGATGAACCGGGAGTTGATGAGTCAGTA 20486
Query 47132 TATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 47170
||||||||| ||||||||| | || |||| | ||||||
Sbjct 20487 TATTGAGTTCGTGGCGGATAGGCTTTTGGGGGCGCTCGG 20525
>seq2054
Length=20018
Score = 86.0 bits (94), Expect = 6e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993
|||| || ||||||||||| || ||||| |||||||||||||||||||| |||
Sbjct 3204 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 3263
Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053
| | | ||| ||||||||||| || |||||||| || || || || | | |
Sbjct 3264 TCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTGT 3323
Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113
| | || |||| | ||| || |||| || | || || || || || ||||| | ||
Sbjct 3324 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTCACGA 3383
Query 132114 AAATCTGCAT 132123
| ||||||||
Sbjct 3384 AGATCTGCAT 3393
>seq3667
Length=14967
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||| | ||| ||| || ||||||||||| ||||
Sbjct 5528 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCG 5587
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || ||||| || || ||||| |||||||| || || || || ||| |
Sbjct 5588 AAGATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACA 5647
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || |||| | || || |||| || | ||| || || || || |||||
Sbjct 5648 TTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTC 5707
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 5708 ACGAAGATCTGCAT 5721
>seq964
Length=27231
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || || ||||| ||| || |||||| ||| ||||||||||||||||
Sbjct 9686 GACTCCTTCTGGATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCG 9627
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| || || ||||| || ||||| || || || || || |
Sbjct 9626 AAGATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACG 9567
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||||||| ||| ||||||| || | || || || || ||||||||
Sbjct 9566 TTATCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTC 9507
Query 132110 ATGAAAATCTGCAT 132123
| |||||| |||||
Sbjct 9506 ACGAAAATTTGCAT 9493
>seq11485
Length=6519
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
|||||| || | | ||||| || || |||||||| || || || || ||| ||
Sbjct 5143 AACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTC 5084
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||||||| || | |||| || | ||| || || ||||| |||||||| || ||
Sbjct 5083 GAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTG 5024
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| || ||||| | || | || || | ||||||||| | || | |||||
Sbjct 5023 AATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCACTTCAAGGGTAATGGTTTT 4964
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||| || || || || | ||||||||||||
Sbjct 4963 ACCGGTGAGTGTCTTGACGAAAATCTGCAT 4934
>seq10768
Length=6938
Score = 82.4 bits (90), Expect = 7e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970
||| ||||| || | | |||||||| || ||||||||||| | || || |||
Sbjct 3327 CAAGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGCGTTCGGCCATC 3386
Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
|| |||||||| || | | ||||||| | |||||||||||| ||||| || ||||||||
Sbjct 3387 CTCTAGCTGTTTCCCAGCAAAGATTAGCCTCTGTTGATCTGGTGGTATCCCCTCTTTATC 3446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476225550047520
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