Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2241 116 4e-21 >seq2241 Length=19256 Score = 116 bits (128), Expect = 4e-21 Identities = 140/185 (76%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 ||| || || | |||| | || || || |||||| || ||||| || || || || || Sbjct 1824 CACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAG 1883 Query 147054 GCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAA 147113 |||||| ||| | || | ||| |||| ||| |||||||||||||| || |||||||| || Sbjct 1884 GCCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAA 1943 Query 147114 CTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT-GGCGGGCAGGTCCGCGGGGTTCCAG 147171 ||| ||| | ||||||||||| || |||||||| || | || || | |||||||| Sbjct 1944 CTGTGCA-AACATGTGGCACGGAGGAAGCGCCATCAGCTTG-AGATCAGAAGGGTTCCAA 2001 Query 147172 GCCGA 147176 ||||| Sbjct 2002 GCCGA 2006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583015870684800