Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 361 8e-94
seq549 331 1e-84
>seq12321
Length=6064
Score = 361 bits (400), Expect = 8e-94
Identities = 399/525 (76%), Gaps = 10/525 (2%)
Strand=Plus/Plus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| |||| |||| | ||| ||||| |||||| || |||||||| ||||||||
Sbjct 814 TGTTCCCAATCCAATACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCCTCCTTC 872
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872
|||||||||||||| ||||||||| || |||||| | |||||| | || | ||||
Sbjct 873 TGGACCGCCGAGGAAGTCGACCTCTCCGGCGACACACGCGACTGGGAGAATCTCAACGAC 932
Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932
| ||||||||| |||||||| |||||||| ||||| || ||||||| ||| || |||||
Sbjct 933 GGCGAGCGCCACTTCATCAAACACGTCCTGGCCTTCTT-CGCCGCCTCCGACGGGATCGT 991
Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992
|||||| || ||| ||| || ||| || ||||| | | ||||| ||| ||
Sbjct 992 CCTCGAGAATCTCGCCTCCCGGTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGTGCCTT 1051
Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052
||||| ||||||||||| || || ||||||||||| || | || |||||| ||||
Sbjct 1052 CTACGGCTTCCAGATCGCGATTGAGAACATCCACTCAGAGATGTATAGTCTCCTGCTCGA 1111
Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112
||||||| |||| ||| |||| |||||||||||| || |||||||| || | ||
Sbjct 1112 CACCTACATCAAAGACAACAAGGAGAGGGACCACCTCTTCCGGGCCATCGAGACCATCCC 1171
Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172
| || ||| |||||| | ||||| |||||||||||| || || ||| | ||
Sbjct 1172 CTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGAC-----GGATCTC-AGAC 1225
Query 1456173 TTT-GCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230
||| || ||| || |||||| ||| ||| ||||||| || ||||| ||||| || || ||
Sbjct 1226 TTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTT 1285
Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||| | ||||| |||||||||||||| || |||||||| |||||
Sbjct 1286 CTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCT 1330
Score = 86.0 bits (94), Expect = 9e-11
Identities = 149/212 (70%), Gaps = 5/212 (2%)
Strand=Plus/Plus
Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590
||| || || |||||||||| |||||||| |||| |||| ||| ||| | | ||
Sbjct 1448 CGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGG 1507
Query 1456591 CATGAA-CGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGC 1456649
||||| || | | | ||| | ||||| || || ||| || || || | || | |
Sbjct 1508 GATGAATCGTGATC--TGATGAGTCAGTATATCGAGTTT-GTGGCGGATAGGCTTTTGGG 1564
Query 1456650 GGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGA 1456709
||||| || | ||| |||| ||| | ||| || ||||| |||||||||||||
Sbjct 1565 CGCGCTTGGGTACGG-GAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGA 1623
Query 1456710 TCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
||||||| |||| ||||||||||| || |||
Sbjct 1624 TCTCGCTTCAGGGGAAGACCAACTTCTTTGAG 1655
>seq549
Length=32968
Score = 331 bits (366), Expect = 1e-84
Identities = 405/547 (74%), Gaps = 12/547 (2%)
Strand=Plus/Plus
Query 1455734 AACCCGA-ACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792
||||| | |||| || | ||||||| |||| ||||| || ||| ||||| |||||| |
Sbjct 19743 AACCCCAGACCGATTCTGCATGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAA 19802
Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852
|||| |||| |||||||| |||||||||||||| ||||||||| | ||||| |
Sbjct 19803 GAAAG-CCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCG 19861
Query 1455853 ACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909
|||||| | || | ||||| |||||| || ||| |||| |||||||||||||| |
Sbjct 19862 ACTGGGAGCAAAACCTCAACGACGGCGAGCGACACTTCGTCAAACACGTCCTCGCCTTCT 19921
Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969
| ||||||| ||| || ||||| |||||| || ||| ||| || ||| || |||
Sbjct 19922 T-CGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTC 19980
Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029
|| | | ||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct 19981 CAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCGATCGAGAACATCCACTCC 20040
Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089
|| | ||| ||||| | ||||| ||| |||| ||| |||| |||||| |||
Sbjct 20041 GAGATGTACAGTCTCCTCTTAGACACTTACATCAAAGACAACAAGGAGAGGGACCATCTC 20100
Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149
|| ||||| ||||| ||| | || | || | |||||||||| | ||||| ||||||||
Sbjct 20101 TTCCGCGCGATCGAGACGATCCCTTGCGTAAAGAAAAAGGCCCAATGGGCCTTGAAGTGG 20160
Query 1456150 ATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGG 1456208
||| | ||||||| ||| |||||| || |||| | || || |||| || |
Sbjct 20161 ATC-----GATGGGCCTCAGGCCTTCGCCGAGAGGATCGTGGCGTTCGCTTGCGTGGAAG 20215
Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268
| ||||| ||||||||||| |||||| | ||||| ||||| |||||||| || |||||||
Sbjct 20216 GGATCTTCTTCTCGGGCAGCTTCTGCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGC 20275
Query 1456269 CCGGTCT 1456275
| |||||
Sbjct 20276 CGGGTCT 20282
Score = 86.0 bits (94), Expect = 9e-11
Identities = 148/211 (70%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590
||| || || |||||||||| |||||||| |||| |||| ||| ||| | | ||
Sbjct 20400 CGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTCCCGTGCGCGTTGGTGGG 20459
Query 1456591 CATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCG 1456650
|||||| | | | ||| | ||||| ||||| || || || || | || | | |
Sbjct 20460 GATGAAC-CGGGAGTTGATGAGTCAGTATATTGAGTTC-GTGGCGGATAGGCTTTTGGGG 20517
Query 1456651 GCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGAT 1456710
|||||||| ||||| |||| ||| | ||| || || || ||||||||||||||
Sbjct 20518 GCGCTCGGGTGCGG-GAAGGTGTACGGTGTGGCGAATCCTTTTGATTGGATGGAGTTGAT 20576
Query 1456711 CTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
|||||| |||| || || || || ||||||
Sbjct 20577 CTCGCTTCAGGGTAAAACGAATTTCTTCGAG 20607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7171567679622584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |