Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12321 361 8e-94 seq549 331 1e-84 >seq12321 Length=6064 Score = 361 bits (400), Expect = 8e-94 Identities = 399/525 (76%), Gaps = 10/525 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | ||| ||||| |||||| || |||||||| |||||||| Sbjct 814 TGTTCCCAATCCAATACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCCTCCTTC 872 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 |||||||||||||| ||||||||| || |||||| | |||||| | || | |||| Sbjct 873 TGGACCGCCGAGGAAGTCGACCTCTCCGGCGACACACGCGACTGGGAGAATCTCAACGAC 932 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | ||||||||| |||||||| |||||||| ||||| || ||||||| ||| || ||||| Sbjct 933 GGCGAGCGCCACTTCATCAAACACGTCCTGGCCTTCTT-CGCCGCCTCCGACGGGATCGT 991 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 |||||| || ||| ||| || ||| || ||||| | | ||||| ||| || Sbjct 992 CCTCGAGAATCTCGCCTCCCGGTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGTGCCTT 1051 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||||| ||||||||||| || || ||||||||||| || | || |||||| |||| Sbjct 1052 CTACGGCTTCCAGATCGCGATTGAGAACATCCACTCAGAGATGTATAGTCTCCTGCTCGA 1111 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 ||||||| |||| ||| |||| |||||||||||| || |||||||| || | || Sbjct 1112 CACCTACATCAAAGACAACAAGGAGAGGGACCACCTCTTCCGGGCCATCGAGACCATCCC 1171 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | || ||| |||||| | ||||| |||||||||||| || || ||| | || Sbjct 1172 CTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGAC-----GGATCTC-AGAC 1225 Query 1456173 TTT-GCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| || ||| || |||||| ||| ||| ||||||| || ||||| ||||| || || || Sbjct 1226 TTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTT 1285 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| | ||||| |||||||||||||| || |||||||| ||||| Sbjct 1286 CTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCT 1330 Score = 86.0 bits (94), Expect = 9e-11 Identities = 149/212 (70%), Gaps = 5/212 (2%) Strand=Plus/Plus Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590 ||| || || |||||||||| |||||||| |||| |||| ||| ||| | | || Sbjct 1448 CGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGG 1507 Query 1456591 CATGAA-CGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGC 1456649 ||||| || | | | ||| | ||||| || || ||| || || || | || | | Sbjct 1508 GATGAATCGTGATC--TGATGAGTCAGTATATCGAGTTT-GTGGCGGATAGGCTTTTGGG 1564 Query 1456650 GGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGA 1456709 ||||| || | ||| |||| ||| | ||| || ||||| ||||||||||||| Sbjct 1565 CGCGCTTGGGTACGG-GAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGA 1623 Query 1456710 TCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||||| |||| ||||||||||| || ||| Sbjct 1624 TCTCGCTTCAGGGGAAGACCAACTTCTTTGAG 1655 >seq549 Length=32968 Score = 331 bits (366), Expect = 1e-84 Identities = 405/547 (74%), Gaps = 12/547 (2%) Strand=Plus/Plus Query 1455734 AACCCGA-ACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| | |||| || | ||||||| |||| ||||| || ||| ||||| |||||| | Sbjct 19743 AACCCCAGACCGATTCTGCATGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAA 19802 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 |||| |||| |||||||| |||||||||||||| ||||||||| | ||||| | Sbjct 19803 GAAAG-CCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCG 19861 Query 1455853 ACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 |||||| | || | ||||| |||||| || ||| |||| |||||||||||||| | Sbjct 19862 ACTGGGAGCAAAACCTCAACGACGGCGAGCGACACTTCGTCAAACACGTCCTCGCCTTCT 19921 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 | ||||||| ||| || ||||| |||||| || ||| ||| || ||| || ||| Sbjct 19922 T-CGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTC 19980 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 || | | ||||| || || ||||| ||||||||||| ||||| ||||||||||| Sbjct 19981 CAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCGATCGAGAACATCCACTCC 20040 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 || | ||| ||||| | ||||| ||| |||| ||| |||| |||||| ||| Sbjct 20041 GAGATGTACAGTCTCCTCTTAGACACTTACATCAAAGACAACAAGGAGAGGGACCATCTC 20100 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149 || ||||| ||||| ||| | || | || | |||||||||| | ||||| |||||||| Sbjct 20101 TTCCGCGCGATCGAGACGATCCCTTGCGTAAAGAAAAAGGCCCAATGGGCCTTGAAGTGG 20160 Query 1456150 ATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGG 1456208 ||| | ||||||| ||| |||||| || |||| | || || |||| || | Sbjct 20161 ATC-----GATGGGCCTCAGGCCTTCGCCGAGAGGATCGTGGCGTTCGCTTGCGTGGAAG 20215 Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 | ||||| ||||||||||| |||||| | ||||| ||||| |||||||| || ||||||| Sbjct 20216 GGATCTTCTTCTCGGGCAGCTTCTGCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGC 20275 Query 1456269 CCGGTCT 1456275 | ||||| Sbjct 20276 CGGGTCT 20282 Score = 86.0 bits (94), Expect = 9e-11 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590 ||| || || |||||||||| |||||||| |||| |||| ||| ||| | | || Sbjct 20400 CGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTCCCGTGCGCGTTGGTGGG 20459 Query 1456591 CATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCG 1456650 |||||| | | | ||| | ||||| ||||| || || || || | || | | | Sbjct 20460 GATGAAC-CGGGAGTTGATGAGTCAGTATATTGAGTTC-GTGGCGGATAGGCTTTTGGGG 20517 Query 1456651 GCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGAT 1456710 |||||||| ||||| |||| ||| | ||| || || || |||||||||||||| Sbjct 20518 GCGCTCGGGTGCGG-GAAGGTGTACGGTGTGGCGAATCCTTTTGATTGGATGGAGTTGAT 20576 Query 1456711 CTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| |||| || || || || |||||| Sbjct 20577 CTCGCTTCAGGGTAAAACGAATTTCTTCGAG 20607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171567679622584