Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq6139 509 2e-139 seq43812 390 1e-103 seq18917 214 2e-50 seq12239 178 1e-39 seq10427 111 2e-19 seq4821 111 2e-19 seq10249 109 6e-19 >seq6139 Length=10899 Score = 509 bits (564), Expect = 2e-139 Identities = 726/1019 (71%), Gaps = 2/1019 (0%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 5076 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 5135 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 5136 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 5195 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 161867 | ||| |||||||| ||||| | |||||||||||| | || ||| || ||| | Sbjct 5196 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 5255 Query 161868 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 161926 || || ||||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 5256 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 5314 Query 161927 TCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 161986 |||||| || ||||| ||||| || ||| ||| | || || || ||| |||||| Sbjct 5315 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 5374 Query 161987 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 162046 || ||||| ||||| ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 5375 TGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 5434 Query 162047 TCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 162106 | || | || || || ||||| || || ||||||||||| |||||||||||||| Sbjct 5435 ATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 5494 Query 162107 CAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 162166 ||||| || || || ||| | ||||| || ||||||| || || || ||||| Sbjct 5495 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGG 5554 Query 162167 GGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAA 162226 || || || || ||| ||||| | | ||| | ||||| || ||||| ||||| |||| Sbjct 5555 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 5614 Query 162227 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCA 162286 ||| || |||||||||||||| |||||| |||| || | || || ||| |||||||| Sbjct 5615 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 5674 Query 162287 CGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 162346 || | || || |||||||| |||| || ||||| || ||||| || || || Sbjct 5675 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 5734 Query 162347 GTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 162406 ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||||| Sbjct 5735 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 5794 Query 162407 GCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 162466 || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||||| Sbjct 5795 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 5854 Query 162467 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 162526 || || | ||| |||||| || |||| | | ||||| ||| | ||||| || Sbjct 5855 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 5914 Query 162527 TGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTT 162586 ||| || || ||||| ||||| ||| | ||||| |||||||| || ||||| || || Sbjct 5915 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 5974 Query 162587 CTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCA 162646 ||| ||||| || ||||| | || ||||| | || || ||| | || || || || Sbjct 5975 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 6034 Query 162647 ACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 6035 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 6093 >seq43812 Length=736 Score = 390 bits (432), Expect = 1e-103 Identities = 435/578 (75%), Gaps = 2/578 (0%) Strand=Plus/Plus Query 160378 CTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160437 |||| ||| | | || || | |||||||| ||| || |||| ||||||||| || | Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60 Query 160438 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160497 ||||||||||||| |||| ||| |||||||||| || || ||||| || |||||||| | Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120 Query 160498 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 160557 | || |||||| | || || ||||| |||||||| || || | || ||||||||| | Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180 Query 160558 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 160616 | | | || ||||| | | | || | ||||| || |||| || || || | Sbjct 181 GTTCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 239 Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 || || | ||||||||||| ||||| || |||||||| || || || || ||||| || Sbjct 240 GGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 299 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 || || ||||||||||||||||| |||||||| || ||||| | || |||||| | Sbjct 300 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 359 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 160796 || || ||||| ||||| || || ||||| |||||| | ||| |||| || ||||| ||| Sbjct 360 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 419 Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||||| || |||||||| |||||||| || | | ||| ||||||| ||||| | || Sbjct 420 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 479 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 160916 || ||||| || | | || |||||| ||||||||||||||||||||||| ||||| Sbjct 480 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 539 Query 160917 GCACACAACTTCCCACTCGACCTCGCTGCTGCTGAGTC 160954 || ||||||||||| || ||||| ||||||| |||||| Sbjct 540 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577 >seq18917 Length=3610 Score = 214 bits (236), Expect = 2e-50 Identities = 295/413 (71%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 ||||| | ||| ||||| |||| | ||||| || || | || ||||| || || || Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 160079 |||||||| || | ||| | ||||| | ||| || |||| ||| | |||||||| Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312 Query 160080 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 160139 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372 Query 160140 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 160199 || || || ||||| || |||| |||| || |||||| | || || ||||| ||| Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432 Query 160200 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTA 160259 |||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | || Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492 Query 160260 TTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGT 160319 | ||||| | | || | | |||||||| ||||||||||||||| | |||| Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552 Query 160320 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGC 160372 | |||||||| || ||||| ||| |||||||| ||||| || || || || Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605 >seq12239 Length=6102 Score = 178 bits (196), Expect = 1e-39 Identities = 380/560 (68%), Gaps = 6/560 (1%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| ||||||| ||||| | ||||||| |||| | | ||| |||| |||| | Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTT-T 445 Query 161867 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 161925 || | ||||| ||||| ||| | | | | |||||| || || || || | || Sbjct 444 AACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTATTACTGT-GG 387 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 ||| ||| || ||||| ||||| || ||| ||| | || || ||| ||||| Sbjct 386 GTCATGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTG 327 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 162045 | | ||||| |||| ||||| |||| || || ||| | ||||| |||||||| || | Sbjct 326 TTTCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTC 267 Query 162046 GTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 162105 | | || | | || || ||||| || || ||||||||||| ||||||| |||| Sbjct 266 GATCTGTTCAATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTA 207 Query 162106 TCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 162165 | | ||| || || || || | ||||| || ||||||| || || || |||| Sbjct 206 TTCCTGCCTTTCTAATTTATCC-TCAGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTG 148 Query 162166 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGA 162225 | || || | || ||| | ||| | | ||| | |||| || |||| ||||| ||| Sbjct 147 GTGTAGCGGTTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGA 88 Query 162226 ACCCCTTCCATATGATGGGA 162245 ||| | |||||||||||| Sbjct 87 ACCATCTACATATGATGGGA 68 >seq10427 Length=7142 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 161135 GATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCT 161194 || || || || || |||||| | || | || ||||| ||||||||| ||||||| Sbjct 1509 GACGCTGCTGAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCG 1450 Query 161195 TCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGAT 161254 |||||| |||||| || | || || |||| ||||||||||||||| ||| | ||| Sbjct 1449 AGCTGTGCCGGTAAAGTTGTGTCTGGATCAGTTGACCAGTCTGACCAGAGTTTCCTCGAT 1390 Query 161255 GATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||||||||||||| |||||| || | || |||| || ||||||||| Sbjct 1389 GATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 1339 >seq4821 Length=12785 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 161135 GATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCT 161194 || || || || || |||||| |||| | || ||||| ||||||||| ||||||| Sbjct 11173 GACGCTGCTGAGGAAGCAGGAATTGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCG 11114 Query 161195 TCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGAT 161254 |||||| |||||| || | || || | || ||||||||||||||| ||| | ||| Sbjct 11113 AGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGAT 11054 Query 161255 GATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||||||||||||| |||||| || | || |||| || ||||||||| Sbjct 11053 GATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 11003 >seq10249 Length=7246 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||| ||| ||||||| ||| ||||||||| || | || ||||| || Sbjct 5680 TACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTACCGTT 5739 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| |||||| || | || Sbjct 5740 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACT 5799 Query 161288 TGTGTTGCATATCCTACT 161305 |||| || ||||||||| Sbjct 5800 TGTGCGGCTTATCCTACT 5817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559051277338400