Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_027130.1
Length=172688
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 482 3e-131
seq43812 387 2e-102
seq18917 196 5e-45
seq12239 170 2e-37
seq10427 100 3e-16
seq4821 95.1 1e-14
seq10249 86.0 7e-12
seq49459 82.4 8e-11
>seq6139
Length=10899
Score = 482 bits (534), Expect = 3e-131
Identities = 722/1020 (71%), Gaps = 4/1020 (0%)
Strand=Plus/Plus
Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958
||||| || | || |||||| | |||| || ||||||||||| || ||||||||
Sbjct 5076 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 5135
Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018
|| | || |||| ||| ||| | ||| | || |||||| | || || ||||| ||
Sbjct 5136 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 5195
Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078
| ||| |||||||| |||||| | |||||||||||| | || ||| || ||| |
Sbjct 5196 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 5255
Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137
|| || ||||| ||||| ||| | | | | |||||| || || || || |||||
Sbjct 5256 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 5314
Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197
|||||| || ||||| ||||| | ||| ||| | || || || ||| ||||||
Sbjct 5315 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 5374
Query 160198 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 160257
|| ||||| ||||| ||||| |||| || || ||| | ||||| |||||||| || ||
Sbjct 5375 TGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 5434
Query 160258 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316
||| || | | || ||||| ||||| || || ||||||||||| |||||||| ||||
Sbjct 5435 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 5493
Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376
| || || || || || ||| | ||||| || ||||||| || || || ||||
Sbjct 5494 TTTCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTG 5553
Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436
| || || || || ||| ||||| | | || | ||||| ||||| || ||||| | |
Sbjct 5554 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 5613
Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496
|||| || |||||||||||||| |||||| |||| || | || ||| | | || || |
Sbjct 5614 ACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTC 5673
Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556
|||| | ||||||||| || || | | ||||||||| || |||||||| || |
Sbjct 5674 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 5733
Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616
| ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||||
Sbjct 5734 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 5793
Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676
| || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||||
Sbjct 5794 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 5853
Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736
| || || | ||| | |||| | |||| | | ||||| ||| | || || |
Sbjct 5854 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTAC 5913
Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796
|||| || || ||||| || || || | ||||| |||||||| ||||||||||| |
Sbjct 5914 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 5973
Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856
|||| || || || || || | || ||||| | || || ||| | || || || |
Sbjct 5974 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATC 6033
Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916
| || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||||
Sbjct 6034 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 6093
>seq43812
Length=736
Score = 387 bits (428), Expect = 2e-102
Identities = 434/578 (75%), Gaps = 2/578 (0%)
Strand=Plus/Plus
Query 158797 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158856
|||| ||| | |||| || | |||||||| ||| || |||| ||||||||| || |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 158857 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158916
||||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 158917 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158976
| || || ||| | ||||| ||||| |||||||| || || || || |||||||||||
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 158977 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAT 159035
| | | || ||||| | | | || | ||||| || |||| || || || |
Sbjct 181 GTTCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 239
Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095
|| |||| ||||| |||||||||||||| || || || || || || || ||||| ||
Sbjct 240 GGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 299
Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155
|| || |||||||||||||| ||| |||||||| || ||||| || || |||||| |
Sbjct 300 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 359
Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 159215
|| || ||||| || || || || ||||| || || | || | || ||||| |||
Sbjct 360 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 419
Query 159216 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 159275
||||| || |||||||| |||||||| || | ||||| |||| || ||||| | ||
Sbjct 420 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 479
Query 159276 ACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 159335
|| ||||| ||| | | |||||||| || |||||||||||||||||||| |||||
Sbjct 480 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 539
Query 159336 GCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTC 159373
|| ||||||||||| || ||||| ||||||| ||||||
Sbjct 540 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 196 bits (216), Expect = 5e-45
Identities = 291/413 (70%), Gaps = 0/413 (0%)
Strand=Plus/Plus
Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438
||||| | ||| ||||| |||| | ||||| || || | || ||||| || || ||
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 158498
|||||||| || | ||| | ||||| | ||| || |||| ||| | ||||||||
Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312
Query 158499 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 158558
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372
Query 158559 ATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 158618
|| || || ||||| || | || |||| || |||||| | || || ||||| |||
Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432
Query 158619 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTC 158678
|||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | ||
Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492
Query 158679 TTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCGC 158738
| ||||| | | || | | |||||||| ||||| ||||||||| | |||
Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552
Query 158739 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGC 158791
| |||||||| || ||||| ||| |||||||| || || || || || ||
Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605
>seq12239
Length=6102
Score = 170 bits (188), Expect = 2e-37
Identities = 383/562 (68%), Gaps = 10/562 (2%)
Strand=Plus/Minus
Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958
||||| || | || |||||| | |||| || ||||||||||| || ||||||||
Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564
Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018
|| | || |||| ||| ||| | ||| | || |||||| | || || ||||| ||
Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504
Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 160077
| ||| ||||||| |||||| | ||||||| |||| | | ||| |||| |||| |
Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTT-T 445
Query 160078 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 160136
|| | ||||| ||||| ||| | | | | |||||| || || || || | ||
Sbjct 444 AACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTATTACTGT-GG 387
Query 160137 GTCCTGAGGCTCAAGGGGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTT 160195
||| ||| || ||||| || ||| ||| | ||| ||| | || || ||| ||||
Sbjct 386 GTCATGAAGCACAAGGAGATTTTAGTC-GTTGGTGTCAATTAAACGGCCTGTGGGTTTTT 328
Query 160196 GTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCA 160255
|| | ||||| |||| ||||| |||| || || ||| | ||||| |||||||| ||
Sbjct 327 GTTTCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 268
Query 160256 CG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTT 160314
|| ||| || | | | ||||| ||||| || || ||||||||||| ||||||| ||
Sbjct 267 CGATCTGTTCAAT-TGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTT 209
Query 160315 TGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTT 160374
| | | || || || || || | ||||| || ||||||| || || || ||
Sbjct 208 TATTCCTGCCTTTCTAATTTATCC-TCAGGTCAATCTGGTTGGTTCTTTGCACCTAGTTT 150
Query 160375 TGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCT 160434
||| || || | || ||| | ||| | | || | |||| ||| | || ||||| |
Sbjct 149 TGGTGTAGCGGTTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATT 90
Query 160435 TAACCCCTTCCATATGATGGGA 160456
|||| | ||||||||||||
Sbjct 89 GAACCATCTACATATGATGGGA 68
>seq10427
Length=7142
Score = 100 bits (110), Expect = 3e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614
|||||||||||||||||||| | || || || || || ||||||||| ||||
Sbjct 1509 GACGCTGCTGAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCG 1450
Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674
| ||||| ||||| ||| | || |||||||||| |||||| |||| | ||
Sbjct 1449 AGCTGTGCCGGTAAAGTTGTGTCTGGATCAGTTGACCAGTCTGACCAGAGTTTCCTCGAT 1390
Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734
||||| || | ||||||||||| |||||||||||| | || ||||| || || ||
Sbjct 1389 GATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGATGTT 1330
Query 159735 ACTAT 159739
|| ||
Sbjct 1329 ACCAT 1325
>seq4821
Length=12785
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614
|||||||||||||||||||| | || || || || || ||||||||| ||||
Sbjct 11173 GACGCTGCTGAGGAAGCAGGAATTGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCG 11114
Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674
| ||||| ||||| ||| | || | |||||||| |||||| |||| | ||
Sbjct 11113 AGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGAT 11054
Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734
||||| || | ||||||||||| |||||||||||| | || ||||| || || ||
Sbjct 11053 GATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGATGTT 10994
Query 159735 ACTAT 159739
|| ||
Sbjct 10993 ACCAT 10989
>seq10249
Length=7246
Score = 86.0 bits (94), Expect = 7e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614
|||||||| ||||||||||| | || || || || || ||||| ||| ||||
Sbjct 5647 GACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGCTCG 5706
Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674
| || || ||||| ||| | || || |||||||| |||||| |||| | ||
Sbjct 5707 AGCTGCGCAGGTAAAGTTGTGTCTGGTACCGTTGACCAGTCTGACCAGAGTTTCCTCGAT 5766
Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734
||||| || | ||||||||||| |||||||||||| | || ||||| || || ||
Sbjct 5767 GATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGATGTT 5826
Query 159735 ACTAT 159739
|| ||
Sbjct 5827 ACCAT 5831
>seq49459
Length=611
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 158831 TTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 158890
||| || |||| ||||||||| || |||||||||||||| |||| ||| ||||||||||
Sbjct 488 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 547
Query 158891 AGCAGAACACAACAT 158905
|| || ||||||||
Sbjct 548 GGCTGAGCACAACAT 562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552026565986560
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