Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq6139 515 5e-141 seq43812 392 4e-104 seq18917 217 2e-51 seq12239 178 2e-39 seq49459 86.0 8e-12 >seq6139 Length=10899 Score = 515 bits (570), Expect = 5e-141 Identities = 702/980 (72%), Gaps = 0/980 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 |||||||| || ||||| || |||||||| ||| | || |||| ||| ||| | || Sbjct 5106 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5165 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| || || || | ||| Sbjct 5166 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 5225 Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCT 180230 ||||||| | |||||| || ||| | || || || || || || |||||| | | Sbjct 5226 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 5285 Query 180231 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGG 180290 | | |||||| | | |||| ||||||||||| | || || |||| || ||| Sbjct 5286 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 5345 Query 180291 TGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGA 180350 || ||| | || || || ||| ||| || |||||||||||||| ||||| |||| || Sbjct 5346 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGT 5405 Query 180351 TTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATT 180410 |||||| |||| || |||||||| || || | || | || ||||| ||||| || Sbjct 5406 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATC 5465 Query 180411 GCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAG 180470 |||||||||||||| || ||||| ||||| || ||||| || || ||||| ||||| Sbjct 5466 GCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAA 5525 Query 180471 TCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTT 180530 || ||||||||||||| || |||||| ||||| || || ||| ||||| | |||||| Sbjct 5526 TCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTT 5585 Query 180531 CTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATA 180590 | || || || || || ||||| | ||||| || |||||||||||||| |||||| || Sbjct 5586 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTA 5645 Query 180591 CTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAA 180650 || || | || || ||| || || ||||| | ||||| || || || | | |||| Sbjct 5646 CTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 5705 Query 180651 GATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTAC 180710 ||||| || ||||| || || || ||| | |||| |||| || |||||||| Sbjct 5706 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTAT 5765 Query 180711 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAG 180770 || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 5766 TCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 5825 Query 180771 CGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT 180830 || ||| | ||||| || ||||| ||||| || || | ||| |||||| || || Sbjct 5826 CGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTT 5885 Query 180831 GGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGA 180890 || | | ||||| ||| | ||||| ||||| || || ||||| || || ||| | Sbjct 5886 GGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGT 5945 Query 180891 GCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGA 180950 ||||| |||||||| || || ||||| ||||| || || || || || || || ||||| Sbjct 5946 GCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGT 6005 Query 180951 CTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAA 181010 | || || ||| |||| || ||||| || || |||||| | || |||||||| || Sbjct 6006 ATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 6065 Query 181011 GTTCTACCAAGAGGTAACGC 181030 ||||||||| | || ||||| Sbjct 6066 GTTCTACCACGTGGAAACGC 6085 >seq43812 Length=736 Score = 392 bits (434), Expect = 4e-104 Identities = 434/576 (75%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 179291 TCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTT 179350 |||| || | |||||||| ||| ||||||| ||||||||| || ||||||||||||| Sbjct 13 TCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTT 72 Query 179351 TTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGC 179410 | |||| ||| |||||||||| || || |||||||| ||||||||||| || || ||| Sbjct 73 TCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGT 132 Query 179411 TCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTA 179470 | ||||| ||||| |||||||| || || || || ||||||||| || | | || | Sbjct 133 TAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAA 192 Query 179471 CTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTC 179529 |||| | | ||| || | ||||| || || | || || || | || || | ||| Sbjct 193 CTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTC 251 Query 179530 GGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATC 179589 || ||||||||||| || || ||||| || || || || || || || || || |||||| Sbjct 252 GGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATC 311 Query 179590 TTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCG 179649 ||||||||||| || ||||| || || ||||| || |||||| | || || |||||| Sbjct 312 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 371 Query 179650 GTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGT 179709 || || || || ||||| |||||| | || | || ||||| |||||||| || ||| Sbjct 372 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGT 431 Query 179710 TTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGAC 179769 ||||| |||||||| || | |||| ||||||||||||| |||| || ||||| || Sbjct 432 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGAT 491 Query 179770 GTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTC 179829 | | |||||||| | |||||||||||||||||||| ||||| || ||||||||| Sbjct 492 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 551 Query 179830 CCACTCGACCTTGCTGCTGCTGAGTCTACACCTGTA 179865 || || ||||| ||||||| ||||||| || || || Sbjct 552 CCTCTAGACCTAGCTGCTGTTGAGTCTCCATCTATA 587 >seq18917 Length=3610 Score = 217 bits (240), Expect = 2e-51 Identities = 296/413 (72%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| || Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCT 178980 ||||||||||| || | | |||||| | ||| || | || ||| | || || ||| Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312 Query 178981 CCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAAC 179040 || || |||||||| || || |||||||| || |||| || || | || |||||||| Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372 Query 179041 ATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATC 179100 || || || ||||| || | || | ||| || |||||| | || || || || ||| Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432 Query 179101 TGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTC 179160 |||||||| ||||| | ||||| ||||| || ||||||||||||| |||| | || Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492 Query 179161 TTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 179220 | ||||| | | || | | |||||||| ||||||||||||||| || |||| Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552 Query 179221 CTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGC 179273 || ||||||||||| ||||| ||||||||| || || || || || ||||| Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605 >seq12239 Length=6102 Score = 178 bits (196), Expect = 2e-39 Identities = 360/529 (68%), Gaps = 4/529 (1%) Strand=Plus/Minus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 |||||||| || ||||| || |||||||| ||| | || |||| ||| ||| | || Sbjct 593 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 534 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| | || || | ||| Sbjct 533 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATATTCATGGATTGGCT 474 Query 180171 TCTTCCTATCTTGAAGGT-GCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 || |||| | |||||| || |||| | || | || || || || |||||| | Sbjct 473 AGTTTCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAATAG 415 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289 | | | |||||| | | |||| |||| || ||| | || || |||| || || Sbjct 414 TTTAGCGCATTCTTTGTTATTACTGTGGG-TCATGAAGCACAAGGAGATTTTAGTCGTTG 356 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | || || ||| ||| || |||||||| |||| ||||| |||| || Sbjct 355 GTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAGTGCTTTCGCATTAATAGG 296 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTAT 180409 |||||| |||| || |||||||| || || | || | | ||||| ||||| || Sbjct 295 TTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTGACCTTATAATGCAAT 236 Query 180410 TGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469 |||||||||||||| || |||| ||| | | ||||| || || || | || ||| Sbjct 235 CGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTTCTAATTTATCCTCAGG-TCA 177 Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529 || ||||||||||||| || |||||| ||||| | || ||| | ||| | ||||| Sbjct 176 ATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTTATATTTCGGTTCATCCTCTT 117 Query 180530 TCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGA 180578 | | || | || | || ||||| | |||| | |||||||||||| Sbjct 116 TTTCCAAGAGTTTTATAATTGGACATTGAACCATCTACATATGATGGGA 68 >seq49459 Length=611 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 179313 TTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 179372 ||| ||||||| ||||||||| || |||||||||||||| |||| ||| |||||||||| Sbjct 488 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 547 Query 179373 AGCAGAACACAACAT 179387 || || |||||||| Sbjct 548 GGCTGAGCACAACAT 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609835751804160