Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq20848 136 5e-27
seq20246 136 5e-27
seq12321 127 3e-24
seq27908 98.7 1e-15
>seq20848
Length=3109
Score = 136 bits (150), Expect = 5e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | ||| | ||||||| ||| | || | |||||| |||| ||||||
Sbjct 2273 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2332
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||| ||| | |||||||| ||| ||| || |||||| |||| || || || || |||
Sbjct 2333 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2392
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||||||||| || || |||| || | ||||| ||||||||| ||||||||
Sbjct 2393 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2452
Query 69930 ACCCTCTATGCTATCATCTATCATG 69954
||||| ||||||||||| |||||
Sbjct 2453 TCCCTCAATGCTATCATCCTTCATG 2477
>seq20246
Length=3254
Score = 136 bits (150), Expect = 5e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | ||| | ||||||| ||| | || | |||||| |||| ||||||
Sbjct 2443 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2384
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||| ||| | |||||||| ||| ||| || |||||| |||| || || || || |||
Sbjct 2383 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2324
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||||||||| || || |||| || | ||||| ||||||||| ||||||||
Sbjct 2323 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2264
Query 69930 ACCCTCTATGCTATCATCTATCATG 69954
||||| ||||||||||| |||||
Sbjct 2263 TCCCTCAATGCTATCATCCTTCATG 2239
>seq12321
Length=6064
Score = 127 bits (140), Expect = 3e-24
Identities = 237/342 (69%), Gaps = 6/342 (2%)
Strand=Plus/Minus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||||||||| || || || || ||||| ||||| || | ||||| || || || ||
Sbjct 1388 GCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAG 1329
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734
|||||||| || |||||||| |||||||| || || | |||| ||| | || || ||||
Sbjct 1328 ACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCG-AGCAGAAGCTTCCGGAGAAGA 1270
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TGT-ATCATTATG 39792
|||| ||||| || || || || || | ||||| || || | || ||| |
Sbjct 1269 AGATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCCGTCG- 1211
Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852
||||||||| ||||| | || |||||| || || || || || || || ||
Sbjct 1210 -ATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCG 1152
Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
||||| | | | || | | ||||| | || || || | | |||||||||||
Sbjct 1151 GAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTATACAT 1092
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954
||||| |||||||| |||||||| ||||| || ||||| ||
Sbjct 1091 CTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAA 1050
>seq27908
Length=1802
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | || | ||||| | ||| | || | |||||| |||| ||||||
Sbjct 708 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 767
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||| |||| ||||| || ||| || |||||||| || || || || || ||
Sbjct 768 ATTTGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACCGA 827
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| |||||| || || || |||| || | ||||| ||||||||| ||||||||
Sbjct 828 AACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 887
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
|| || ||||||||||| ||||| | ||||| |||||
Sbjct 888 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686352987744480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |