Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq20848 136 5e-27 seq20246 136 5e-27 seq12321 127 3e-24 seq27908 98.7 1e-15 >seq20848 Length=3109 Score = 136 bits (150), Expect = 5e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||||| ||| | || | |||||| |||| |||||| Sbjct 2273 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2332 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| ||| || |||||| |||| || || || || ||| Sbjct 2333 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2392 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||||||||| || || |||| || | ||||| ||||||||| |||||||| Sbjct 2393 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2452 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| ||||||||||| ||||| Sbjct 2453 TCCCTCAATGCTATCATCCTTCATG 2477 >seq20246 Length=3254 Score = 136 bits (150), Expect = 5e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||||| ||| | || | |||||| |||| |||||| Sbjct 2443 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2384 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| ||| || |||||| |||| || || || || ||| Sbjct 2383 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2324 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||||||||| || || |||| || | ||||| ||||||||| |||||||| Sbjct 2323 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2264 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| ||||||||||| ||||| Sbjct 2263 TCCCTCAATGCTATCATCCTTCATG 2239 >seq12321 Length=6064 Score = 127 bits (140), Expect = 3e-24 Identities = 237/342 (69%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||||||||| || || || || ||||| ||||| || | ||||| || || || || Sbjct 1388 GCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAG 1329 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 |||||||| || |||||||| |||||||| || || | |||| ||| | || || |||| Sbjct 1328 ACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCG-AGCAGAAGCTTCCGGAGAAGA 1270 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TGT-ATCATTATG 39792 |||| ||||| || || || || || | ||||| || || | || ||| | Sbjct 1269 AGATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCCGTCG- 1211 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||||||| ||||| | || |||||| || || || || || || || || Sbjct 1210 -ATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCG 1152 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||| | | | || | | ||||| | || || || | | ||||||||||| Sbjct 1151 GAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTATACAT 1092 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 ||||| |||||||| |||||||| ||||| || ||||| || Sbjct 1091 CTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAA 1050 >seq27908 Length=1802 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 708 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 767 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| |||| ||||| || ||| || |||||||| || || || || || || Sbjct 768 ATTTGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACCGA 827 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | |||||| || || || |||| || | ||||| ||||||||| |||||||| Sbjct 828 AACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 887 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || ||||||||||| ||||| | ||||| ||||| Sbjct 888 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686352987744480