Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq41676 87.8 1e-12 >seq41676 Length=800 Score = 87.8 bits (96), Expect = 1e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 40982 GATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 ||| ||| | |||| ||| || || |||||| ||| || ||||| || | ||| | Sbjct 751 GATCAAAAACAATCCTGATGATCGCCGGATAATAATGTCAGCTTGGAATCCTTCTGACCT 692 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 | |||||||| | || ||||| || |||| ||||||||| ||| ||||| || Sbjct 691 TAAGCTGATGGCACTTCCTCCTTGCCACATGTTTCCTCAGTTTTATGTTGCAAATGGAGA 632 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 | || |||||| ||||||| | |||| ||| || | || || || ||||||||||| Sbjct 631 GTTTTCGTGTCAAATGTATCAGTGCTCAGCTGATATCAGTCTTGGTGTACCGTTTAACAT 572 Query 41162 AGc 41164 || Sbjct 571 TGC 569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397142438515660