Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 100 9e-16
seq549 100 9e-16
>seq12321
Length=6064
Score = 100 bits (110), Expect = 9e-16
Identities = 312/476 (66%), Gaps = 18/476 (4%)
Strand=Plus/Plus
Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465
|| ||| | ||| ||||| | || |||||||||| || | |||||| ||||||
Sbjct 936 GAGCGCCACTTCATCAAACACGTCCTGGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTC 995
Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522
|||||||| | | || ||| | ||| | || | ||||||| || ||||
Sbjct 996 GAGAATCTCGCCTCCCGGTTCATGTCCGACGTCCAGGTCT---CCGAGGCGCGTGCCTTC 1052
Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582
|||| ||||| ||| || |||||||| ||| | ||| | || |||| || || |
Sbjct 1053 TACGGCTTCCAGATCGCGATTGAGAACATCCACTCAGAGATGTATAGTCTCCTGCTCGAC 1112
Query 443583 ACACTAATTCCGAACGAAGACGAACAGCGGTCCA--TCTTCTCATCGTTCATGACCACGC 443640
|| ||| || | || | | | || || ||| ||||| | || ||||| |
Sbjct 1113 AC-CTACATCAAAGACAACAAGGAGAG-GGACCACCTCTTCCGGGCCATCGAGACCATCC 1170
Query 443641 CAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGC- 443699
| || || | | ||| | | ||||| | ||||| |||| || ||||||
Sbjct 1171 CCTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA-----TCTCAGAC 1225
Query 443700 -TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
|||| ||| | | ||||| || || |||||||| | || || ||| |||||
Sbjct 1226 TTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTT 1285
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
|| || ||||||||| | || |||||||| || |||| ||||||||||| ||||
Sbjct 1286 CTGC-TCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACG 1344
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874
| || ||| | |||||||| | || ||||| |||||||| || |||| |||
Sbjct 1345 AGCTCATCTCGAGAGACGAGGGGCTTCACTGCGATTTCGCCTGCCTGATCTATACC 1400
>seq549
Length=32968
Score = 100 bits (110), Expect = 9e-16
Identities = 308/468 (66%), Gaps = 20/468 (4%)
Strand=Plus/Plus
Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474
||| ||||| | || | |||||||| || | |||||| |||||| ||||||||
Sbjct 19897 TTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTC 19956
Query 443475 GTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531
| | |||||| | ||| | || | ||||||||||| |||||||| |||
Sbjct 19957 GCCTCCCGTTTCATGTCCGACGTCCAGGTCT---CCGAGGCCCGCGCCTTCTACGGCTTC 20013
Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591
|| ||| || |||||||| ||| ||||| | ||||||| | | ||||||| |
Sbjct 20014 CAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTT--AGACACTTACA 20071
Query 443592 CCGAACG-AAGACGAACAGCGGTCCATCTTCTCATCGT--TCATGACCACGCCAGGCATC 443648
| || || | | | || || |||||| || || || ||| | || || |
Sbjct 20072 TCAAAGACAACAAGGAGAG-GGACCATCTCTTCCGCGCGATCGAGACGATCCCTTGCGTA 20130
Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAG--CTTCGTCG 443706
| ||||| | | ||||| ||||| |||| | ||||| ||||| ||
Sbjct 20131 AAGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGATGGGC-----CTCAGGCCTTCGCCG 20185
Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766
|| | | || || || ||| || ||||| | || || |||||||| || ||
Sbjct 20186 AGAGGATCGTGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGC-TCG 20244
Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826
||||||||| |||| |||||||| || |||| ||||| ||||| ||||| ||||||
Sbjct 20245 ATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGCTGATC 20304
Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874
| ||||| || | || ||||||||||| || || ||||| ||
Sbjct 20305 TCGAGAGACGAAGGCCTCCACTGCGACTTCGCGTGCCTGATCTACTCC 20352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1587018667873740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |