Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq12321 100 9e-16 seq549 100 9e-16 >seq12321 Length=6064 Score = 100 bits (110), Expect = 9e-16 Identities = 312/476 (66%), Gaps = 18/476 (4%) Strand=Plus/Plus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 || ||| | ||| ||||| | || |||||||||| || | |||||| |||||| Sbjct 936 GAGCGCCACTTCATCAAACACGTCCTGGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTC 995 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 |||||||| | | || ||| | ||| | || | ||||||| || |||| Sbjct 996 GAGAATCTCGCCTCCCGGTTCATGTCCGACGTCCAGGTCT---CCGAGGCGCGTGCCTTC 1052 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| ||||| ||| || |||||||| ||| | ||| | || |||| || || | Sbjct 1053 TACGGCTTCCAGATCGCGATTGAGAACATCCACTCAGAGATGTATAGTCTCCTGCTCGAC 1112 Query 443583 ACACTAATTCCGAACGAAGACGAACAGCGGTCCA--TCTTCTCATCGTTCATGACCACGC 443640 || ||| || | || | | | || || ||| ||||| | || ||||| | Sbjct 1113 AC-CTACATCAAAGACAACAAGGAGAG-GGACCACCTCTTCCGGGCCATCGAGACCATCC 1170 Query 443641 CAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGC- 443699 | || || | | ||| | | ||||| | ||||| |||| || |||||| Sbjct 1171 CCTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA-----TCTCAGAC 1225 Query 443700 -TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 |||| ||| | | ||||| || || |||||||| | || || ||| ||||| Sbjct 1226 TTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTT 1285 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || || ||||||||| | || |||||||| || |||| ||||||||||| |||| Sbjct 1286 CTGC-TCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACG 1344 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 | || ||| | |||||||| | || ||||| |||||||| || |||| ||| Sbjct 1345 AGCTCATCTCGAGAGACGAGGGGCTTCACTGCGATTTCGCCTGCCTGATCTATACC 1400 >seq549 Length=32968 Score = 100 bits (110), Expect = 9e-16 Identities = 308/468 (66%), Gaps = 20/468 (4%) Strand=Plus/Plus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| ||||| | || | |||||||| || | |||||| |||||| |||||||| Sbjct 19897 TTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTC 19956 Query 443475 GTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | | |||||| | ||| | || | ||||||||||| |||||||| ||| Sbjct 19957 GCCTCCCGTTTCATGTCCGACGTCCAGGTCT---CCGAGGCCCGCGCCTTCTACGGCTTC 20013 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 || ||| || |||||||| ||| ||||| | ||||||| | | ||||||| | Sbjct 20014 CAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTT--AGACACTTACA 20071 Query 443592 CCGAACG-AAGACGAACAGCGGTCCATCTTCTCATCGT--TCATGACCACGCCAGGCATC 443648 | || || | | | || || |||||| || || || ||| | || || | Sbjct 20072 TCAAAGACAACAAGGAGAG-GGACCATCTCTTCCGCGCGATCGAGACGATCCCTTGCGTA 20130 Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAG--CTTCGTCG 443706 | ||||| | | ||||| ||||| |||| | ||||| ||||| || Sbjct 20131 AAGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGATGGGC-----CTCAGGCCTTCGCCG 20185 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 || | | || || || ||| || ||||| | || || |||||||| || || Sbjct 20186 AGAGGATCGTGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGC-TCG 20244 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| |||| |||||||| || |||| ||||| ||||| ||||| |||||| Sbjct 20245 ATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGCTGATC 20304 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 | ||||| || | || ||||||||||| || || ||||| || Sbjct 20305 TCGAGAGACGAAGGCCTCCACTGCGACTTCGCGTGCCTGATCTACTCC 20352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587018667873740